paper-status

paper-status is a skill for Claude Code, Codex from matthewdigiuseppe/MStack. It costs 74 tokens per session (843 once invoked), scanned A, original, MIT.

A starter command for creating a research-paper project with folders for the paper, data, code, results, and project memory.

In plain words
What is it for?
It is for starting a new paper, project, or study in LaTeX or Quarto, a tool for combining text with executable analysis.
Why use it?
It gives a new study a consistent layout so later research and analysis tasks know where to find files.

Skill for Claude CodeCodex

Part of the mstack plugin — 38 skills, 1 hook shipped together

Install

Getting it into your agent

One page per mod, every tool's command on it. A separate URL per tool would split the same page into five that compete with each other.

agentmods
npx agentmods add skills/matthewdigiuseppe/mstack/paper-status
Any agent
npx skills add matthewdigiuseppe/MStack --skill paper-status
Clone the repo
git clone --depth 1 https://github.com/matthewdigiuseppe/MStack

Made for: Claude Code, Codex.

Or install mstack, the plugin that ships this one along with the rest of its 38 skills, 1 hook.

Wrote this? Show the measurements

A badge with what this costs and how it scanned, read live from this page, so it follows the numbers instead of freezing them. Markdown for a README, HTML for a documentation site or a project page.

agentmods badge for paper-status

README.md
[![agentmods](https://agentmods.dev/badge/skills/matthewdigiuseppe/mstack/paper-status.svg)](https://agentmods.dev/skills/matthewdigiuseppe/mstack/paper-status)
Your own site
<a href="https://agentmods.dev/skills/matthewdigiuseppe/mstack/paper-status"><img src="https://agentmods.dev/badge/skills/matthewdigiuseppe/mstack/paper-status.svg" alt="Measured on agentmods" height="20"></a>
Per session 74 Skills are progressive disclosure: only the name and description are preloaded; the body loads when the skill is used.
When invoked 843 The whole file, excluding the scripts and references it only reads on demand.
Security scan A 0 findings. Scan, not verified.
Origin original No closer match found in the catalogue.
Token cost

What it costs to keep this loaded

Counted locally with the o200k_base tokenizer, which is exact for GPT models; Claude uses its own tokenizer and its counts differ. Treat this as one consistent yardstick across the catalogue rather than a bill. Prices are per million input tokens.

ModelPer sessionOnce invoked
Fable 5 $0.00074 $0.00843
Opus 5 $0.00037 $0.00421
Sonnet 5 $0.00015 $0.00169
Haiku 4.5 $0.00007 $0.00084

Measured 4d ago against content hash ccac5d118c1b, method: parsed. Prices are Anthropic first-party input rates as of 2026-08-30, from the pricing page.

Security

Grade A, and why

paper-status scanned grade A with 0 findings against 26 rules in 11 categories — prompt injection, anti-refusal, data exfiltration, privilege escalation, supply chain, agent snooping, system-prompt leakage, SSRF and excessive agency — measured 4d ago.

A static scan of the body, not an audit. Every finding is printed with the line that produced it so you can judge whether it matters here. A mod is markdown that instructs an agent; that is exactly why what it instructs is worth reading.

Nothing flagged

None of the 26 patterns this scan looks for appear in this file: no shell pipes, no recursive deletes, no credential paths, no hidden text, no instruction-override or anti-refusal phrasing, no agent-config snooping. That is not a guarantee, it is the absence of the things that are checkable.

skills/paper-status/SKILL.md · 59 lines

How it starts

The opening of the file, as written. The whole thing — 59 lines — stays where its author put it; the contents beside it link to each section on GitHub.

/mstack:paper-status

Stage: power (any time) Voice: project-manager

When to invoke

Opening a session on an existing paper. Returning after a gap. Whenever the user asks "where were we?", "what's next?", or which skill to run. This skill is read-only apart from an offered paper.status correction.

Procedure

  1. Locate the paper folder. Find .mstack/ in the current directory or an ancestor. If none exists, say so and suggest /mstack:mstack-init.

  2. Read .mstack/config.yaml — title, paper.status, format, design.prereg, target journals.

  3. Inventory the pipeline. For each stage, check its artifacts and pull the verdict line (grep for Verdict) plus the file date:

    Stage Artifacts to check
    Ideate .mstack/research-question.md, idea-shotgun-*.md, scope-challenge-*.md
    Map .mstack/lit-map.md, theory.md, hypotheses.md, identification-review-*.md
    Design .mstack/design-research.md, power-analysis.md, survey-design.md, prereg/osf-prereg.md
    Build data/raw/PROVENANCE.md, data/clean/analytic.rds, data/codebook.md
    Analyze code/02-analyze.R, output/tables/*.tex, .mstack/results-audit-*.md, robustness-*.md, output/figures/*
    Write non-stub `paper/sections/*.tex
    Submit .mstack/journal-fit-*.md, submission/cover-letter.md, submission/response-to-reviewers/*
    Reflect .mstack/retro.md, replication-manifest.txt
  4. Flag staleness. A verdict is stale when its inputs changed after it was written — e.g. a results-audit older than code/02-analyze.R, or an identification review older than methods.tex. Compare file modification times and flag each stale verdict for a re-run.

  5. Reconcile paper.status. Derive the stage from the artifacts (the furthest stage with substantive output). If it disagrees with paper.status in config, say so and offer to update the field.

Read the full file on GitHub · 59 lines

Changes

What this file has done since we first saw it

Hashed on every crawl. A supply-chain change to an agent config is a question of when, not whether, so the history is kept rather than the latest state alone.

  1. 4d ago First seen · 59 lines · 74 tokens per session scan A ccac5d118c1b

Subscribe to this mod's changes

paper-status is a skill published in the GitHub repository matthewdigiuseppe/MStack (14 stars, last pushed 8d ago), licensed MIT. It adds 74 tokens to every session and 843 once invoked, about $0.0004 per session on Opus 5. A static security scan graded it A with 0 findings. No closer match exists in the catalogue, so it is treated as the original; first seen 2026-08-30.

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