setup-openmed

setup-openmed is a skill for Claude Code, Codex from maziyarpanahi/openmed. It costs 62 tokens per session (1,562 once invoked), scanned A, original, Apache-2.0.

A guide for recording the privacy decisions that will govern a clinical-text de-identification project in a reviewable policy file. De-identification means removing or changing information that could identify a person.

In plain words
What is it for?
Use it to document the jurisdiction, required recall, replacement strategy, model rules, audit location, and human approval process for a de-identification run.
Why use it?
It removes hidden or inconsistent privacy choices before data processing begins. It creates a draft policy, but does not certify compliance or transform any clinical data.

Skill for Claude CodeCodex

Written for no agent in particular: nothing here depends on one.

Part of the openmed-skills plugin — 74 skills shipped together

Good fit Use it to document the jurisdiction, required recall, replacement strategy, model rules, audit location, and human approval process for a de-identification run.

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Install with agentmods
npx agentmods add skills/maziyarpanahi/openmed/setup-openmed
About the project

OpenMed is local-first healthcare AI software that extracts clinical information and removes personally identifying details from clinical text on hardware controlled by the user. Healthcare developers use its Python runtime, Apple Silicon and mobile SDKs, and browser support for on-device clinical NER and PII de-identification.

maziyarpanahi/openmed · 5,263 stars · on GitHub · openmed.life

Install

Getting it into your agent

One page per mod, every tool's command on it. A separate URL per tool would split the same page into five that compete with each other.

Any agent
npx skills add maziyarpanahi/openmed --skill setup-openmed
Clone the repo
git clone --depth 1 https://github.com/maziyarpanahi/openmed

Made for: Claude Code, Codex.

Or install openmed-skills, the plugin that ships this one along with the rest of its 74 skills.

Wrote this? Show the measurements

A badge with what this costs and how it scanned, read live from this page, so it follows the numbers instead of freezing them. Markdown for a README, HTML for a documentation site or a project page.

agentmods badge for setup-openmed

README.md
[![agentmods](https://agentmods.dev/badge/skills/maziyarpanahi/openmed/setup-openmed/github.svg)](https://agentmods.dev/skills/maziyarpanahi/openmed/setup-openmed)
Your own site
<a href="https://agentmods.dev/skills/maziyarpanahi/openmed/setup-openmed"><img src="https://agentmods.dev/badge/skills/maziyarpanahi/openmed/setup-openmed/github.svg" alt="Measured on agentmods" height="20"></a>

Or the 80×15 button, for a site that already has a row of RSS and ATOM ones. Only the verdict fits; the numbers stay here.

agentmods 80×15 button for setup-openmed

Your own site · 80×15
<a href="https://agentmods.dev/skills/maziyarpanahi/openmed/setup-openmed"><img src="https://agentmods.dev/badge/skills/maziyarpanahi/openmed/setup-openmed.svg" alt="Reviewed on agentmods" width="80" height="20"></a>
Per session 62 Skills are progressive disclosure: only the name and description are preloaded; the body loads when the skill is used.
When invoked 1,562 The whole file, excluding the scripts and references it only reads on demand.
Security scan A 0 findings. A grade says what 26 rules found in the file — not that it is safe. Third-party audits
  • NVIDIA SkillSpector pass 7 Sept 2026
How audits are shown
Origin original No closer match found in the catalogue.
Token cost

What it costs to keep this loaded

Counted locally with the o200k_base tokenizer, which is exact for GPT models; Claude uses its own tokenizer and its counts differ. Treat this as one consistent yardstick across the catalogue rather than a bill. Prices are per million input tokens.

ModelPer sessionOnce invoked
Fable 5.1 $0.00062 $0.01562
Opus 5 $0.00031 $0.00781
Sonnet 5 $0.00012 $0.00312
Haiku 4.5 $0.00006 $0.00156

Measured 5d ago against content hash 9c56db90034b, method: parsed. Prices are Anthropic first-party input rates as of 2026-09-08, from the pricing page.

Security

Grade A, and why

setup-openmed scanned grade A with 0 findings against 26 rules in 11 categories — prompt injection, anti-refusal, data exfiltration, privilege escalation, supply chain, agent snooping, system-prompt leakage, SSRF and excessive agency — measured 5d ago.

A static scan of the body, not an audit. Every finding is printed with the line that produced it so you can judge whether it matters here. A mod is markdown that instructs an agent; that is exactly why what it instructs is worth reading.

Nothing flagged

None of the 26 patterns this scan looks for appear in this file: no shell pipes, no recursive deletes, no credential paths, no hidden text, no instruction-override or anti-refusal phrasing, no agent-config snooping. That is not a guarantee, it is the absence of the things that are checkable.

skills/setup-openmed/SKILL.md · 139 lines

How it starts

The opening of the file, as written. The whole thing — 139 lines — stays where its author put it; the contents beside it link to each section on GitHub.

Set up an OpenMed de-identification policy

Use this skill before a de-identification pipeline when the privacy decisions are not already recorded. It creates a small policy document; it does not inspect, transform, upload, or retain clinical data. The setup is local-first, deterministic, and has no mandatory network call.

The output is a draft configuration contract, not a compliance certification, legal opinion, or guarantee of de-identification. A human must review and approve the draft before it controls a run.

When to use this skill

Use it when a project needs to turn implicit privacy choices into a reviewable DEID-POLICY.md file. Use the focused de-identification skills afterward to apply or audit the selected policy.

Do not use this skill to collect a note, dataset row, identifier, model output, secret, credential, or any other source payload. The setup questions accept policy choices only. Keep logs, exceptions, reports, and fixtures free of raw sensitive values.

Bounded decision contract

Collect these five decisions, one at a time. Do not invent a sixth field or silently choose a value. The value written to the artifact must be the lowercase canonical value in the right-hand column.

Decision Bounded choices (canonical value)
Jurisdiction or operating context us, eu, canada, research, organization-defined
Recall floor 0.90, 0.95, 0.99
Surrogate strategy mask, remove, replace, hash
Model policy local-preinstalled, local-user-supplied, rules-only
Audit location separate-local-directory, controlled-artifact-store, no-retention

The jurisdiction choices are context labels, not findings that a law applies. For example, us may be used for a US/HIPAA-context workflow and eu for an EU/GDPR-context workflow, but the generated document must not claim that the workflow is compliant. research and organization-defined require the project's own governance review.

Read the full file on GitHub · 139 lines

Files

What ships with it

1 file beside SKILL.md in the same directory: the scripts, references and assets a skill reads on demand. Not counted in the per-session cost; read them before you install if any of them is executable.

Changes

What this file has done since we first saw it

Hashed on every crawl. A supply-chain change to an agent config is a question of when, not whether, so the history is kept rather than the latest state alone.

  1. 5d ago First seen · 139 lines · 62 tokens per session scan A 9c56db90034b

Subscribe to this mod's changes

setup-openmed is a skill published in the GitHub repository maziyarpanahi/openmed (5,263 stars, last pushed today), licensed Apache-2.0. It adds 62 tokens to every session and 1,562 once invoked, about $0.0003 per session on Opus 5. A static security scan graded it A with 0 findings. No closer match exists in the catalogue, so it is treated as the original; first seen 2026-09-03.

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