research-codebase

research-codebase is a skill for Claude Code, Codex from nikeyes/stepwise-dev. It costs 15 tokens per session (817 once invoked), scanned A, original, Apache-2.0.

A codebase research guide that explains how an existing software project is organised and works, while recording historical context in a thoughts directory.

In plain words
What is it for?
Use it to investigate a specific component, process, or idea in a codebase and document the relevant files, behaviour, and context.
Why use it?
It helps answer questions about current code without mixing in suggestions or criticism, and preserves the reasoning behind what you find.

Skill for Claude CodeCodex

Written for Claude Code and Codex: disable-model-invocation in frontmatter, but also agents/openai.yaml present. Also seen: model in frontmatter; mentions subagents.

Runs only inside its plugin — its command needs a path that Claude Code sets for a plugin’s own hooks and for nothing else. Install the plugin, not this.

Part of the stepwise-core plugin — 14 skills, 10 agents shipped together

Good fit Use it to investigate a specific component, process, or idea in a codebase and document the relevant files, behaviour, and context.

Compare 6 skills from other repositories ↓
Install

Getting it into your agent

This one installs as part of its plugin. Adding the marketplace and installing the plugin brings it with everything else the plugin ships.

Claude Code
/plugin marketplace add nikeyes/stepwise-dev
Claude Code
/plugin install stepwise-core

Made for: Claude Code, Codex.

Or install stepwise-core, the plugin that ships this one along with the rest of its 14 skills, 10 agents.

Wrote this? Show the measurements

A badge with what this costs and how it scanned, read live from this page, so it follows the numbers instead of freezing them. Markdown for a README, HTML for a documentation site or a project page.

agentmods badge for research-codebase

README.md
[![agentmods](https://agentmods.dev/badge/skills/nikeyes/stepwise-dev/research-codebase/github.svg)](https://agentmods.dev/skills/nikeyes/stepwise-dev/research-codebase)
Your own site
<a href="https://agentmods.dev/skills/nikeyes/stepwise-dev/research-codebase"><img src="https://agentmods.dev/badge/skills/nikeyes/stepwise-dev/research-codebase/github.svg" alt="Measured on agentmods" height="20"></a>

Or the 80×15 button, for a site that already has a row of RSS and ATOM ones. Only the verdict fits; the numbers stay here.

agentmods 80×15 button for research-codebase

Your own site · 80×15
<a href="https://agentmods.dev/skills/nikeyes/stepwise-dev/research-codebase"><img src="https://agentmods.dev/badge/skills/nikeyes/stepwise-dev/research-codebase.svg" alt="Reviewed on agentmods" width="80" height="20"></a>
Per session 15 Skills are progressive disclosure: only the name and description are preloaded; the body loads when the skill is used.
When invoked 817 The whole file, excluding the scripts and references it only reads on demand.
Security scan A 0 findings. A grade says what 26 rules found in the file — not that it is safe.
Origin original No closer match found in the catalogue.
Token cost

What it costs to keep this loaded

Counted locally with the o200k_base tokenizer, which is exact for GPT models; Claude uses its own tokenizer and its counts differ. Treat this as one consistent yardstick across the catalogue rather than a bill. Prices are per million input tokens.

ModelPer sessionOnce invoked
Fable 5.1 $0.00015 $0.00817
Opus 5.5 $0.00006 $0.00327
Sonnet 5.5 $0.00003 $0.00163
Haiku 4.5 $0.00002 $0.00082

Measured 1mo ago against content hash ccdb5071bd8e, method: parsed. Prices are Anthropic first-party input rates as of 2026-10-07, from the pricing page.

Security

Grade A, and why

research-codebase scanned grade A with 0 findings against 26 rules in 11 categories — prompt injection, anti-refusal, data exfiltration, privilege escalation, supply chain, agent snooping, system-prompt leakage, SSRF and excessive agency — measured 1mo ago.

A static scan of the body, not an audit. Every finding is printed with the line that produced it so you can judge whether it matters here. A mod is markdown that instructs an agent; that is exactly why what it instructs is worth reading.

Nothing flagged

None of the 26 patterns this scan looks for appear in this file: no shell pipes, no recursive deletes, no credential paths, no hidden text, no instruction-override or anti-refusal phrasing, no agent-config snooping. That is not a guarantee, it is the absence of the things that are checkable.

core/skills/research-codebase/SKILL.md · 86 lines

How it starts

The opening of the file, as written. The whole thing — 86 lines — stays where its author put it; the contents beside it link to each section on GitHub.

Research Codebase

You are tasked with researching the codebase to answer user questions. Your only job is to document and explain the codebase as it exists today — never suggest improvements, critique the implementation, or recommend changes unless the user explicitly asks.

Input

Research Query: $ARGUMENTS

  • If $ARGUMENTS is empty, ask the user for their research question and wait.
  • If $ARGUMENTS is vague or ambiguous (e.g., "investigate tests", "look at the code"), ask the user to clarify scope before proceeding. A good research question names a specific component, flow, or concept.
  • If $ARGUMENTS is clear, proceed directly.

How to research

  1. Read mentioned files first. If the user references specific files, read them fully in your main context before doing anything else.

  2. Investigate the question. Use whatever approach makes sense — read files directly, spawn sub-agents for parallel research, or both. The specialized agents available to you are:

    • stepwise-core:codebase-locator — finds WHERE files and components live
    • stepwise-core:codebase-analyzer — understands HOW specific code works
    • stepwise-core:codebase-pattern-finder — finds examples of existing patterns with code
    • stepwise-core:thoughts-locator — discovers relevant documents in thoughts/
    • stepwise-core:thoughts-analyzer — extracts key insights from thoughts/ documents
    • stepwise-web:web-search-researcher — web research (only if user explicitly asks)

    When the question spans multiple components, spawn agents in parallel for efficiency.

  3. Synthesize findings. Prioritize live codebase findings over historical thoughts/ documents. Include specific file paths and line numbers.

Save the research document

  1. If thoughts/ doesn't exist, initialize it:
    bash ${CLAUDE_PLUGIN_ROOT:-$HOME/.agents}/skills/thoughts-management/scripts/thoughts-init
    

Read the full file on GitHub · 86 lines

Files

What ships with it

1 file beside SKILL.md in the same directory: the scripts, references and assets a skill reads on demand. Not counted in the per-session cost; read them before you install if any of them is executable.

Changes

What this file has done since we first saw it

Hashed on every crawl. A supply-chain change to an agent config is a question of when, not whether, so the history is kept rather than the latest state alone.

  1. 1mo ago Changed ccdb5071bd8e
  2. 1mo ago Changed 917a79cc15b9
  3. 1mo ago First seen · 86 lines · 15 tokens per session scan A cd2012c7e641

Subscribe to this mod's changes

research-codebase is a skill published in the GitHub repository nikeyes/stepwise-dev (24 stars, last pushed 6d ago), licensed Apache-2.0. It adds 15 tokens to every session and 817 once invoked, about $0.0001 per session on Opus 5.5. A static security scan graded it A with 0 findings. No closer match exists in the catalogue, so it is treated as the original; first seen 2026-08-30.

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