nvalchemi-loss-api

nvalchemi-loss-api is a skill for Claude Code, Codex from NVIDIA/nvalchemi-toolkit. It costs 77 tokens per session (2,145 once invoked), scanned A, original, Apache-2.0.

An API guide for choosing and writing loss functions in nvalchemi, a machine-learning library for atomic simulations. Loss functions measure how far model predictions are from target energies, forces, or stresses during training.

In plain words
What is it for?
Use it to choose energy, force, or stress losses, normalize or mask training data, balance graph-level contributions, or implement a custom loss.
Why use it?
It helps match the training objective to the data, handle different system sizes, ignore selected atoms or graphs, and combine several objectives with clear weights.

Skill for Claude CodeCodex

About the project

ALCHEMI Toolkit is a Python framework that uses GPUs to run atomic simulations and train machine-learned models for chemistry and materials science. Researchers and developers use it for molecular dynamics, geometry relaxation, and model training across one or multiple GPUs. Its catalogue add-ons guide coding agents in using the toolkit’s APIs and repository conventions.

NVIDIA/nvalchemi-toolkit · 159 stars · on GitHub

Install

Getting it into your agent

One page per mod, every tool's command on it. A separate URL per tool would split the same page into five that compete with each other.

agentmods
npx agentmods add skills/nvidia/nvalchemi-toolkit/nvalchemi-loss-api
Any agent
npx skills add NVIDIA/nvalchemi-toolkit --skill nvalchemi-loss-api
Clone the repo
git clone --depth 1 https://github.com/NVIDIA/nvalchemi-toolkit

Made for: Claude Code, Codex.

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A badge with what this costs and how it scanned, read live from this page, so it follows the numbers instead of freezing them. Markdown for a README, HTML for a documentation site or a project page.

agentmods badge for nvalchemi-loss-api

README.md
[![agentmods](https://agentmods.dev/badge/skills/nvidia/nvalchemi-toolkit/nvalchemi-loss-api.svg)](https://agentmods.dev/skills/nvidia/nvalchemi-toolkit/nvalchemi-loss-api)
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<a href="https://agentmods.dev/skills/nvidia/nvalchemi-toolkit/nvalchemi-loss-api"><img src="https://agentmods.dev/badge/skills/nvidia/nvalchemi-toolkit/nvalchemi-loss-api.svg" alt="Measured on agentmods" height="20"></a>
Per session 77 Skills are progressive disclosure: only the name and description are preloaded; the body loads when the skill is used.
When invoked 2,145 The whole file, excluding the scripts and references it only reads on demand.
Security scan A 0 findings. Scan, not verified.
Origin original No closer match found in the catalogue.
Token cost

What it costs to keep this loaded

Counted locally with the o200k_base tokenizer, which is exact for GPT models; Claude uses its own tokenizer and its counts differ. Treat this as one consistent yardstick across the catalogue rather than a bill. Prices are per million input tokens.

ModelPer sessionOnce invoked
Fable 5.1 $0.00077 $0.02145
Opus 5 $0.00039 $0.01073
Sonnet 5 $0.00015 $0.00429
Haiku 4.5 $0.00008 $0.00215

Measured 5d ago against content hash 16dd113544b8, method: parsed. Prices are Anthropic first-party input rates as of 2026-09-05, from the pricing page.

Security

Grade A, and why

nvalchemi-loss-api scanned grade A with 0 findings against 26 rules in 11 categories — prompt injection, anti-refusal, data exfiltration, privilege escalation, supply chain, agent snooping, system-prompt leakage, SSRF and excessive agency — measured 5d ago.

A static scan of the body, not an audit. Every finding is printed with the line that produced it so you can judge whether it matters here. A mod is markdown that instructs an agent; that is exactly why what it instructs is worth reading.

Nothing flagged

None of the 26 patterns this scan looks for appear in this file: no shell pipes, no recursive deletes, no credential paths, no hidden text, no instruction-override or anti-refusal phrasing, no agent-config snooping. That is not a guarantee, it is the absence of the things that are checkable.

.claude/skills/nvalchemi-loss-api/SKILL.md · 236 lines

How it starts

The opening of the file, as written. The whole thing — 236 lines — stays where its author put it; the contents beside it link to each section on GitHub.

nvalchemi Loss API

Overview

Loss functions are torch.nn.Module subclasses rooted at BaseLossFunction. Each leaf consumes (pred, target, **kwargs) and returns a scalar. ComposedLossFunction routes keyed prediction/target mappings to leaves, applies per-component weights (float or LossWeightSchedule), and returns a ComposedLossOutput TypedDict.

from nvalchemi.training import (
    BaseLossFunction,
    ComposedLossFunction,
    ReductionContext,
    EnergyMSELoss,
    EnergyMAELoss,
    ForceMSELoss,
    ForceL2NormLoss,
    StressMSELoss,
)

Built-in losses

Choose losses by the training signal you want:

  • EnergyMSELoss: default for smooth energy regression when larger errors should dominate early training; combine with per_atom=True when system sizes vary.
  • EnergyMAELoss: more robust to outlier energies and often useful for reporting or late-stage fitting when median absolute accuracy matters.
  • EnergyHuberLoss: compromise between MSE and MAE; use when energy labels have occasional noisy outliers but small residuals should remain smooth.
  • ForceMSELoss: default force objective; component-wise squared residuals give strong gradients for geometry-sensitive fitting.
  • ForceL2NormLoss: use when vector direction/magnitude per atom is the desired error signal rather than independent xyz components.
  • ForceHuberLoss: robust force fitting when some force labels are noisy or contain rare large residuals.
  • StressMSELoss / StressHuberLoss: add only when stress labels are reliable and the model is configured to produce stresses.

Composition sugar:

loss_fn = 1.0 * EnergyMSELoss() + 10.0 * ForceMSELoss() + 0.1 * StressMSELoss()
out = loss_fn(predictions, targets, step=step, epoch=epoch, batch=batch)
out["total_loss"].backward()

Graph metadata: losses that need graph structure (per_atom=True, normalize_by_atom_count=True, or padded layouts) accept batch= (pulls batch_idx, num_graphs, num_nodes_per_graph automatically) or explicit kwargs.

Read the full file on GitHub · 236 lines

Changes

What this file has done since we first saw it

Hashed on every crawl. A supply-chain change to an agent config is a question of when, not whether, so the history is kept rather than the latest state alone.

  1. 5d ago First seen · 236 lines · 77 tokens per session scan A 16dd113544b8

Subscribe to this mod's changes

nvalchemi-loss-api is a skill published in the GitHub repository NVIDIA/nvalchemi-toolkit (159 stars, last pushed yesterday), licensed Apache-2.0. It adds 77 tokens to every session and 2,145 once invoked, about $0.0004 per session on Opus 5. A static security scan graded it A with 0 findings. No closer match exists in the catalogue, so it is treated as the original; first seen 2026-08-30.

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