ALCHEMI Toolkit is a Python framework that uses GPUs to run atomic simulations and train machine-learned models for chemistry and materials science. Researchers and developers use it for molecular dynamics, geometry relaxation, and model training across one or multiple GPUs. Its catalogue add-ons guide coding agents in using the toolkit’s APIs and repository conventions.
Getting it into your agent
One page per mod, every tool's command on it. A separate URL per tool would split the same page into five that compete with each other.
npx agentmods add skills/nvidia/nvalchemi-toolkit/nvalchemi-loss-apinpx skills add NVIDIA/nvalchemi-toolkit --skill nvalchemi-loss-apigit clone --depth 1 https://github.com/NVIDIA/nvalchemi-toolkitWrote this? Show the measurements
A badge with what this costs and how it scanned, read live from this page, so it follows the numbers instead of freezing them. Markdown for a README, HTML for a documentation site or a project page.
[](https://agentmods.dev/skills/nvidia/nvalchemi-toolkit/nvalchemi-loss-api)<a href="https://agentmods.dev/skills/nvidia/nvalchemi-toolkit/nvalchemi-loss-api"><img src="https://agentmods.dev/badge/skills/nvidia/nvalchemi-toolkit/nvalchemi-loss-api.svg" alt="Measured on agentmods" height="20"></a>What it costs to keep this loaded
Counted locally with the o200k_base tokenizer, which is exact for GPT models; Claude uses its own tokenizer and its counts differ. Treat this as one consistent yardstick across the catalogue rather than a bill. Prices are per million input tokens.
| Model | Per session | Once invoked |
|---|---|---|
| Fable 5.1 | $0.00077 | $0.02145 |
| Opus 5 | $0.00039 | $0.01073 |
| Sonnet 5 | $0.00015 | $0.00429 |
| Haiku 4.5 | $0.00008 | $0.00215 |
Grade A, and why
nvalchemi-loss-api scanned grade A with 0 findings against 26 rules in 11 categories — prompt injection, anti-refusal, data exfiltration, privilege escalation, supply chain, agent snooping, system-prompt leakage, SSRF and excessive agency — measured 5d ago.
A static scan of the body, not an audit. Every finding is printed with the line that produced it so you can judge whether it matters here. A mod is markdown that instructs an agent; that is exactly why what it instructs is worth reading.
Nothing flagged
None of the 26 patterns this scan looks for appear in this file: no shell pipes, no recursive deletes, no credential paths, no hidden text, no instruction-override or anti-refusal phrasing, no agent-config snooping. That is not a guarantee, it is the absence of the things that are checkable.
How it starts
The opening of the file, as written. The whole thing — 236 lines — stays where its author put it; the contents beside it link to each section on GitHub.
nvalchemi Loss API
Overview
Loss functions are torch.nn.Module subclasses rooted at BaseLossFunction.
Each leaf consumes (pred, target, **kwargs) and returns a scalar.
ComposedLossFunction routes keyed prediction/target mappings to leaves,
applies per-component weights (float or LossWeightSchedule), and returns
a ComposedLossOutput TypedDict.
from nvalchemi.training import (
BaseLossFunction,
ComposedLossFunction,
ReductionContext,
EnergyMSELoss,
EnergyMAELoss,
ForceMSELoss,
ForceL2NormLoss,
StressMSELoss,
)
Built-in losses
Choose losses by the training signal you want:
EnergyMSELoss: default for smooth energy regression when larger errors should dominate early training; combine withper_atom=Truewhen system sizes vary.EnergyMAELoss: more robust to outlier energies and often useful for reporting or late-stage fitting when median absolute accuracy matters.EnergyHuberLoss: compromise between MSE and MAE; use when energy labels have occasional noisy outliers but small residuals should remain smooth.ForceMSELoss: default force objective; component-wise squared residuals give strong gradients for geometry-sensitive fitting.ForceL2NormLoss: use when vector direction/magnitude per atom is the desired error signal rather than independent xyz components.ForceHuberLoss: robust force fitting when some force labels are noisy or contain rare large residuals.StressMSELoss/StressHuberLoss: add only when stress labels are reliable and the model is configured to produce stresses.
Composition sugar:
loss_fn = 1.0 * EnergyMSELoss() + 10.0 * ForceMSELoss() + 0.1 * StressMSELoss()
out = loss_fn(predictions, targets, step=step, epoch=epoch, batch=batch)
out["total_loss"].backward()
Graph metadata: losses that need graph structure (per_atom=True,
normalize_by_atom_count=True, or padded layouts) accept batch=
(pulls batch_idx, num_graphs, num_nodes_per_graph automatically)
or explicit kwargs.
What this file has done since we first saw it
Hashed on every crawl. A supply-chain change to an agent config is a question of when, not whether, so the history is kept rather than the latest state alone.
- 5d ago First seen · 236 lines · 77 tokens per session scan A 16dd113544b8
nvalchemi-loss-api is a skill published in the GitHub repository NVIDIA/nvalchemi-toolkit (159 stars, last pushed yesterday), licensed Apache-2.0. It adds 77 tokens to every session and 2,145 once invoked, about $0.0004 per session on Opus 5. A static security scan graded it A with 0 findings. No closer match exists in the catalogue, so it is treated as the original; first seen 2026-08-30.
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