Empowering spatial transcriptomics research by providing AI agents with a standardized interface to Nextflow pipelines, Viash components, and comprehensive documentation, accelerating discovery in the OpenProblems project.
4 files for GitHub Copilot, Codex, OpenCode, Claude Code and Gemini CLI: SpatialAI_MCP copilot-instructions.md, SpatialAI_MCP AGENTS.md, SpatialAI_MCP CLAUDE.md, SpatialAI_MCP GEMINI.md — 9,039 tokens loaded in every session.
.github/copilot-instructions.md A 3,776 tok AGENTS.md A 1,373 tok CLAUDE.md A 114 tok GEMINI.md A 3,776 tok These files are Rebell-Leader/SpatialAI_MCP's own configuration — they tell GitHub Copilot, Codex, OpenCode, Claude Code and Gemini CLI how to work on this repository, so they are not mods to install elsewhere. Copy one as a starting point and replace the parts that are about this project.