Skill Claude CodeCodex
Part of the AlterLab Academic Skills suite. Cloud laboratory platform for automated protein testing and validation. Use when designing proteins and needing experimental validation including binding assays, expression testing, thermostability measurements, enzyme activity assays, or protein sequence optimization. Also…
Skill Claude CodeCodex
Part of the AlterLab Academic Skills suite. This skill should be used for time series machine learning tasks including classification, regression, clustering, forecasting, anomaly detection, segmentation, and similarity search. Use when working with temporal data, sequential patterns, or time-indexed observations…
Skill Claude CodeCodex
Part of the AlterLab Academic Skills suite. Access real-time and historical stock market data, forex rates, cryptocurrency prices, commodities, economic indicators, and 50+ technical indicators via the Alpha Vantage API. Use when fetching stock prices (OHLCV), company fundamentals (income statement, balance sheet…
Skill Claude CodeCodex
Access AlphaFold 200M+ AI-predicted protein structures. Retrieve structures by UniProt ID, download PDB/mmCIF files, analyze confidence metrics (pLDDT, PAE), for drug discovery and structural biology. Part of the AlterLab Academic Skills suite.
Skill Claude CodeCodex
Data structure for annotated matrices in single-cell analysis. Use when working with .h5ad files or integrating with the scverse ecosystem. This is the data format skill—for analysis workflows use scanpy; for probabilistic models use scvi-tools; for population-scale queries use cellxgene-census. Part of the AlterLab…
Skill Claude CodeCodex
Infer gene regulatory networks (GRNs) from gene expression data using scalable algorithms (GRNBoost2, GENIE3). Use when analyzing transcriptomics data (bulk RNA-seq, single-cell RNA-seq) to identify transcription factor-target gene relationships and regulatory interactions. Supports distributed computation for…
Skill Claude CodeCodex
Search and retrieve preprints from arXiv via the Atom API. Use this skill when searching for papers in physics, mathematics, computer science, quantitative biology, quantitative finance, statistics, electrical engineering, or economics by keywords, authors, arXiv IDs, date ranges, or categories. Part of the AlterLab…
Skill Claude CodeCodex
Part of the AlterLab Academic Skills suite. Comprehensive Python library for astronomy and astrophysics. This skill should be used when working with astronomical data including celestial coordinates, physical units, FITS files, cosmological calculations, time systems, tables, world coordinate systems (WCS), and…
Skill Claude CodeCodex
Part of the AlterLab Academic Skills suite. Benchling R&D platform integration. Access registry (DNA, proteins), inventory, ELN entries, workflows via API, build Benchling Apps, query Data Warehouse, for lab data management automation.
Skill Claude Code
Part of the AlterLab Academic Skills suite. Search scientific papers and retrieve structured experimental data extracted from full-text studies via the BGPT MCP server. Returns 25+ fields per paper including methods, results, sample sizes, quality scores, and conclusions. Use for literature reviews, evidence…
Skill Claude CodeCodex
Query BindingDB for measured drug-target binding affinities (Ki, Kd, IC50, EC50). Search by target (UniProt ID), compound (SMILES/name), or pathogen. Essential for drug discovery, lead optimization, polypharmacology analysis, and structure-activity relationship (SAR) studies. Part of the AlterLab Academic Skills suite.
Skill Claude CodeCodex
Comprehensive molecular biology toolkit. Use for sequence manipulation, file parsing (FASTA/GenBank/PDB), phylogenetics, and programmatic NCBI/PubMed access (Bio.Entrez). Best for batch processing, custom bioinformatics pipelines, BLAST automation. For quick lookups use gget; for multi-service integration use…
Skill Claude CodeCodex
Efficient database search tool for bioRxiv preprint server. Use this skill when searching for life sciences preprints by keywords, authors, date ranges, or categories, retrieving paper metadata, downloading PDFs, or conducting literature reviews. Part of the AlterLab Academic Skills suite.
Skill Claude CodeCodex
Unified Python interface to 40+ bioinformatics services. Use when querying multiple databases (UniProt, KEGG, ChEMBL, Reactome) in a single workflow with consistent API. Best for cross-database analysis, ID mapping across services. For quick single-database lookups use gget; for sequence/file manipulation use…
Skill Claude CodeCodex
Access BRENDA enzyme database via SOAP API. Retrieve kinetic parameters (Km, kcat), reaction equations, organism data, and substrate-specific enzyme information for biochemical research and metabolic pathway analysis. Part of the AlterLab Academic Skills suite.
Skill Claude CodeCodex
Query cBioPortal for cancer genomics data including somatic mutations, copy number alterations, gene expression, and survival data across hundreds of cancer studies. Essential for cancer target validation, oncogene/tumor suppressor analysis, and patient-level genomic profiling. Part of the AlterLab Academic Skills…
Skill Claude CodeCodex
This skill should be used when the user asks about "animation", "storyboard", "animatic", "pre-visualization", "previz", "character design", "motion planning", "animation storyboard", "act as an animation designer", "animation mode", "character design brief", "animation pipeline", "2D animation", "3D previz"…
Skill Claude CodeCodex
This skill should be used when the user asks about "documentary", "documentary research", "interview questions", "documentary treatment", "archival research", "documentary ethics", "act as a documentary researcher", "documentary mode", "non-fiction film", "documentary proposal", "documentary subject research", "oral…
Skill Claude CodeCodex
This skill should be used when the user asks about "film festival", "festival submission", "logline", "synopsis writing", "director's statement", "festival strategy", "act as a festival strategist", "festival mode", "film submission", "short film festival", "festival circuit", "premiere strategy", "FilmFreeway"…
Skill Claude CodeCodex
This skill should be used when the user asks about "film analysis", "movie analysis", "film essay", "sequence analysis", "mise-en-scene", "film theory", "cinematography analysis", "film critique", "act as a film analyst", "film analysis mode", "formal analysis", "auteur theory", "film semiotics", "narrative analysis…
Skill Claude CodeCodex
This skill should be used when the user asks about "film pitch", "treatment writing", "pitch deck", "lookbook", "mood board", "film proposal", "funding application", "act as a film pitch developer", "film pitch mode", "pitch package", "film financing", "producer pitch", "story treatment", "concept development", "film…
Skill Claude CodeCodex
This skill should be used when the user asks about "post-production", "video editing", "color grading", "color correction", "sound post-production", "DaVinci Resolve", "Premiere Pro", "editing workflow", "act as a post-production guide", "post-production mode", "export settings", "delivery specs", "editing strategy"…
Skill Claude CodeCodex
This skill should be used when the user asks about "pre-production", "shot list", "storyboard", "shooting schedule", "call sheet", "script breakdown", "scene breakdown", "production planning", "act as a pre-production planner", "pre-production mode", "location scouting", "crew planning", "shooting day schedule"…
Skill Claude CodeCodex
This skill should be used when the user asks about "production management", "film budget", "scheduling", "crew management", "location logistics", "risk assessment", "act as a production manager", "production manager mode", "line producing", "production budget", "crew roles", "film insurance", "production timeline"…
At most 3 mods per repository are shown here, and a mod shipped inside a plugin is left to that plugin's page — the rest are on their repository pages: