report-integration

Installed Root

Resolve the installed reasflow-dev skills root before running packaged scripts:

REASFLOW_SKILLS_ROOT="${REASFLOW_SKILLS_ROOT:-}"
if [ -z "$REASFLOW_SKILLS_ROOT" ]; then
  if [ -d ./.agents/skills ]; then
    REASFLOW_SKILLS_ROOT="$(pwd)/.agents/skills"
  elif [ -d "$HOME/.agents/skills" ]; then
    REASFLOW_SKILLS_ROOT="$HOME/.agents/skills"
  else
    echo "reasflow shared skills not found in ./.agents/skills or $HOME/.agents/skills" >&2
    exit 1
  fi
fi

REASFLOW_PRIVATE_SKILLS_ROOT="${REASFLOW_PRIVATE_SKILLS_ROOT:-}"
if [ -z "$REASFLOW_PRIVATE_SKILLS_ROOT" ]; then
  if [ -d ./.codex/reasflow-skills ]; then
    REASFLOW_PRIVATE_SKILLS_ROOT="$(pwd)/.codex/reasflow-skills"
  elif [ -d "$HOME/.codex/reasflow-skills" ]; then
    REASFLOW_PRIVATE_SKILLS_ROOT="$HOME/.codex/reasflow-skills"
  else
    echo "reasflow private skills not found in ./.codex/reasflow-skills or $HOME/.codex/reasflow-skills" >&2
    exit 1
  fi
fi

Report Integration

Overview

Integrate outputs while preserving provenance: every imported statement should map to a concrete source file or command result.

Installed Paths

Set:

SKILL_ROOT="$REASFLOW_PRIVATE_SKILLS_ROOT/latex-writer/report-integration"

Helper Commands

Run reproducible command capture:

python3 "$SKILL_ROOT/scripts/execute_command.py" \
  --cwd output/Paper03_SudaMuon \
  --timeout 120 \
  --format text \
  "rg -n '\\\\cite' main.tex"

Merge multiple notes into one provenance-preserving report:

python3 "$SKILL_ROOT/scripts/integrate_report.py" \
  --output output/Paper03_SudaMuon/reports/integrated.md \
  --input output/Paper03_SudaMuon/reports/theory.md \
  --input output/Paper03_SudaMuon/reports/experiments.md \
  --input output/Paper03_SudaMuon/reports/review.md

Python env fallback:

uv run "$SKILL_ROOT/scripts/execute_command.py" --format json "ls -la"
uv run "$SKILL_ROOT/scripts/integrate_report.py" --output integrated.md --input note1.md