A visualization skill for creating Obsidian graph settings and Canvas knowledge maps from a research wiki. Obsidian is a note-taking app that can display linked notes as graphs and canvases.

Use it to generate graph color settings or maps filtered by node types, relationship types, focus nodes, or graph depth.

It turns connected wiki entries into visual maps, making relationships and focused areas easier to explore.

How skyllwt/AutoSci configures Claude Code

About the project

AutoSci is an AI research platform organized around a wiki, with an agent that supports stages of scientific work such as reading, experimentation, writing, and retaining knowledge across projects. It is for people building or using AI-assisted research workflows, with Claude Code, Codex, and OpenCode adaptations available. The catalogue add-ons extend those agent-specific workflows.

skyllwt/AutoSci · 1,706 stars · on GitHub

Reuse

Borrowing it

Nothing to install: this file belongs to skyllwt/AutoSci. Take a copy, put it at the same path in your own repository, and replace the rules that are about this project with yours.

Copy the file

curl -O https://raw.githubusercontent.com/skyllwt/AutoSci/main/.claude/skills/visualize/SKILL.md

Clone the repo

git clone --depth 1 https://github.com/skyllwt/AutoSci

Made for: Claude Code.

Wrote this? Show the measurements

A badge with what this costs and how it scanned, read live from this page, so it follows the numbers instead of freezing them. Markdown for a README, HTML for a documentation site or a project page.

README.md

[![agentmods](https://agentmods.dev/badge/skills/skyllwt/autosci/visualize/github.svg)](https://agentmods.dev/skills/skyllwt/autosci/visualize)

Your own site

<a href="https://agentmods.dev/skills/skyllwt/autosci/visualize"><img src="https://agentmods.dev/badge/skills/skyllwt/autosci/visualize/github.svg" alt="Measured on agentmods" height="20"></a>

Or the 80×15 button, for a site that already has a row of RSS and ATOM ones. Only the verdict fits; the numbers stay here.

Your own site · 80×15

<a href="https://agentmods.dev/skills/skyllwt/autosci/visualize"><img src="https://agentmods.dev/badge/skills/skyllwt/autosci/visualize.svg" alt="Reviewed on agentmods" width="80" height="20"></a>

Per session 0 Skills are progressive disclosure: only the name and description are preloaded; the body loads when the skill is used.

When invoked 2,966 The whole file, excluding the scripts and references it only reads on demand.

Security scan A 0 findings. A grade says what 26 rules found in the file — not that it is safe. Third-party audits

NVIDIA SkillSpector pass 7 Sept 2026

How audits are shown

Origin original No closer match found in the catalogue.

Token cost

What it costs to keep this loaded

Counted locally with the o200k_base tokenizer, which is exact for GPT models; Claude uses its own tokenizer and its counts differ. Treat this as one consistent yardstick across the catalogue rather than a bill. Prices are per million input tokens.

Model	Per session	Once invoked
Fable 5.1	$0.00000	$0.02966
Opus 5.5	$0.00000	$0.01186
Sonnet 5.5	$0.00000	$0.00593
Haiku 4.5	$0.00000	$0.00297

Measured 2mo ago against content hash 69f3b346de6c, method: parsed. Prices are Anthropic first-party input rates as of 2026-10-07, from the pricing page.

Security

Grade A, and why

visualize scanned grade A with 0 findings against 26 rules in 11 categories — prompt injection, anti-refusal, data exfiltration, privilege escalation, supply chain, agent snooping, system-prompt leakage, SSRF and excessive agency — measured 2mo ago.

A static scan of the body, not an audit. Every finding is printed with the line that produced it so you can judge whether it matters here. A mod is markdown that instructs an agent; that is exactly why what it instructs is worth reading.

Nothing flagged

None of the 26 patterns this scan looks for appear in this file: no shell pipes, no recursive deletes, no credential paths, no hidden text, no instruction-override or anti-refusal phrasing, no agent-config snooping. That is not a guarantee, it is the absence of the things that are checkable.

.claude/skills/visualize/SKILL.md · 269 lines

How it starts

The opening of the file, as written. The whole thing — 269 lines — stays where its author put it; the contents beside it link to each section on GitHub.

/visualize

Generate visualization artifacts for the OmegaWiki knowledge graph. Produces Obsidian graph config (color groups by entity type) and curated Canvas views with labeled typed edges. For interactive web exploration use the SPA Graph view (tools/serve.py, then #/graph).

Inputs

--obsidian (optional): Generate/update .obsidian/graph.json with entity-type color groups
--canvas (optional): Generate Obsidian Canvas (.canvas) from graph data with labeled edges
--focus <node_id> (optional): Center canvas on a specific node (e.g., methods/my-method)
--depth N (optional): BFS depth for focused canvas (default: 2)
--types <list> (optional): Filter nodes to these page types, comma-separated (e.g., papers,concepts)
--edge-types <list> (optional): Filter edges to these semantic types, comma-separated (e.g., builds_on,challenges)
--all (optional, default if no flags): Generate all visualization artifacts

Outputs

wiki/.obsidian/graph.json — Obsidian graph color configuration (per-entity-type color groups)
wiki/.obsidian/app.json — Obsidian app settings (only if not exists)
wiki/canvases/knowledge-map.canvas — Full knowledge map Canvas with labeled edges
wiki/canvases/idea-evidence.canvas — Idea-centric subgraph Canvas
wiki/canvases/focus-{node-id}.canvas — Focused Canvas (when --focus is used)
Console output: Obsidian plugin recommendations and setup instructions

The standalone-HTML explorer (wiki/graph-view.html) was retired; the SPA Graph view at app/modules/graph.js (served by tools/serve.py) covers the same use case and lives in the same codebase as the rest of the frontend.

Wiki Interaction

Reads

wiki/graph/edges.jsonl — typed semantic edges
wiki/graph/citations.jsonl — bibliographic paper citations
wiki/*/ — all entity directories for page metadata (frontmatter)
config/visualize.json — color palette and visualization preferences

Writes

wiki/.obsidian/graph.json — CREATE/OVERWRITE (local-only artifact, gitignored; regenerated each run from config/visualize.json)
wiki/.obsidian/app.json — CREATE only (never overwrite user customizations; gitignored)
wiki/canvases/*.canvas — CREATE/OVERWRITE (local-only artifact, gitignored)

Read the full file on GitHub · 269 lines

Changes

What this file has done since we first saw it

Hashed on every crawl. A supply-chain change to an agent config is a question of when, not whether, so the history is kept rather than the latest state alone.

2mo ago First seen · 269 lines · 0 tokens per session scan A 69f3b346de6c

Subscribe to this mod's changes

visualize is a skill published in the GitHub repository skyllwt/AutoSci (1,706 stars, last pushed 1mo ago), licensed MIT. It costs nothing until one of its globs matches a file; then it loads 2,966 tokens. A static security scan graded it A with 0 findings. No closer match exists in the catalogue, so it is treated as the original; first seen 2026-08-30.

Research

visualize next to 6 skills from other repositories
Mod	Type	Stars	Last push	Licence	Scan	Tokens	Works with
visualizeskyllwt/AutoSci	Skill	1.7k	1mo ago	MIT	A	0	Claude Code
imagegenopenai/codex	Skill	133k	today	Apache-2.0	A	113	Codex
playwright-climicrosoft/playwright	Skill	99k	yesterday	Apache-2.0	A	19	Claude Code
local-ai-agentsmicrosoft/ai-agents-for-beginners	Skill	79k	4d ago	MIT	A	200	Claude Code, Codex
systematic-debuggingobra/superpowers	Skill	313k	3d ago	MIT	A	21	Claude Code
next-cache-components-adoptionvercel/next.js	Skill	143k	today	MIT	A	95	Claude Code
next-partial-prefetching-adoptionvercel/next.js	Skill	143k	today	MIT	A	103	Claude Code

AutoSci: Skill for Claude Code