synthetic-sciences/openscience is an AI workbench that carries out scientific research by reading papers, forming hypotheses, writing and running code, conducting experiments, analyzing results, and preparing reports. Researchers use it for work in machine learning, biology, physics, and chemistry with remote or local models. Catalogue add-ons extend its scientific workflows through skills and instructions.
Getting it into your agent
One page per mod, every tool's command on it. A separate URL per tool would split the same page into five that compete with each other.
npx skills add synthetic-sciences/openscience --skill pineconegit clone --depth 1 https://github.com/synthetic-sciences/openscienceWrote this? Show the measurements
A badge with what this costs and how it scanned, read live from this page, so it follows the numbers instead of freezing them. Markdown for a README, HTML for a documentation site or a project page.
[](https://agentmods.dev/skills/synthetic-sciences/openscience/pinecone)<a href="https://agentmods.dev/skills/synthetic-sciences/openscience/pinecone"><img src="https://agentmods.dev/badge/skills/synthetic-sciences/openscience/pinecone/github.svg" alt="Measured on agentmods" height="20"></a>Or the 80×15 button, for a site that already has a row of RSS and ATOM ones. Only the verdict fits; the numbers stay here.
<a href="https://agentmods.dev/skills/synthetic-sciences/openscience/pinecone"><img src="https://agentmods.dev/badge/skills/synthetic-sciences/openscience/pinecone.svg" alt="Reviewed on agentmods" width="80" height="20"></a>What it costs to keep this loaded
Counted locally with the o200k_base tokenizer, which is exact for GPT models; Claude uses its own tokenizer and its counts differ. Treat this as one consistent yardstick across the catalogue rather than a bill. Prices are per million input tokens.
| Model | Per session | Once invoked |
|---|---|---|
| Fable 5.1 | $0.00063 | $0.02246 |
| Opus 5.5 | $0.00025 | $0.00898 |
| Sonnet 5.5 | $0.00013 | $0.00449 |
| Haiku 4.5 | $0.00006 | $0.00225 |
Grade A, and why
pinecone scanned grade A with 0 findings against 26 rules in 11 categories — prompt injection, anti-refusal, data exfiltration, privilege escalation, supply chain, agent snooping, system-prompt leakage, SSRF and excessive agency — measured 1mo ago.
A static scan of the body, not an audit. Every finding is printed with the line that produced it so you can judge whether it matters here. A mod is markdown that instructs an agent; that is exactly why what it instructs is worth reading.
Nothing flagged
None of the 26 patterns this scan looks for appear in this file: no shell pipes, no recursive deletes, no credential paths, no hidden text, no instruction-override or anti-refusal phrasing, no agent-config snooping. That is not a guarantee, it is the absence of the things that are checkable.
This is a copy
86% identical to pinecone — 61 lines differ, which has more behind it and is treated as the original. This page carries a canonical link to it rather than competing with it.
How it starts
The opening of the file, as written. The whole thing — 371 lines — stays where its author put it; the contents beside it link to each section on GitHub.
Pinecone - Managed Vector Database
The vector database for production AI applications.
When to use Pinecone
Use when:
- Need managed, serverless vector database
- Production RAG applications
- Auto-scaling required
- Low latency critical (<100ms)
- Don't want to manage infrastructure
- Need hybrid search (dense + sparse vectors)
Metrics:
- Fully managed SaaS
- Auto-scales to billions of vectors
- p95 latency <100ms
- 99.9% uptime SLA
Use alternatives instead:
- Chroma: Self-hosted, open-source
- FAISS: Offline, pure similarity search
- Weaviate: Self-hosted with more features
Quick start
Installation
pip install pinecone-client
Basic usage
from pinecone import Pinecone, ServerlessSpec
# Initialize
pc = Pinecone(api_key="your-api-key")
# Create index
pc.create_index(
name="my-index",
dimension=1536, # Must match embedding dimension
metric="cosine", # or "euclidean", "dotproduct"
spec=ServerlessSpec(cloud="aws", region="us-east-1")
)
# Connect to index
index = pc.Index("my-index")
# Upsert vectors
index.upsert(vectors=[
{"id": "vec1", "values": [0.1, 0.2, ...], "metadata": {"category": "A"}},
{"id": "vec2", "values": [0.3, 0.4, ...], "metadata": {"category": "B"}}
])
# Query
results = index.query(
vector=[0.1, 0.2, ...],
top_k=5,
include_metadata=True
)
print(results["matches"])
Credential Setup
Credentials are auto-injected by openscience when connected via the dashboard.
# Verify credentials
[ -n "$PINECONE_API_KEY" ] && echo "PINECONE_API_KEY set" || echo "NOT SET"
If not set: add your Pinecone key in Customize → Tools or export PINECONE_API_KEY locally.
Core operations
Create index
# Serverless (recommended)
pc.create_index(
name="my-index",
dimension=1536,
metric="cosine",
spec=ServerlessSpec(
cloud="aws", # or "gcp", "azure"
region="us-east-1"
)
)
# Pod-based (for consistent performance)
from pinecone import PodSpec
pc.create_index(
name="my-index",
dimension=1536,
metric="cosine",
spec=PodSpec(
environment="us-east1-gcp",
pod_type="p1.x1"
)
)
What ships with it
1 file beside SKILL.md in the same directory: the scripts, references and assets a skill reads on demand. Not counted in the per-session cost; read them before you install if any of them is executable.
What this file has done since we first saw it
Hashed on every crawl. A supply-chain change to an agent config is a question of when, not whether, so the history is kept rather than the latest state alone.
- 1mo ago First seen · 371 lines · 63 tokens per session scan A 2150b5060fe2
pinecone is a skill published in the GitHub repository synthetic-sciences/openscience (4,082 stars, last pushed yesterday), licensed Apache-2.0. It adds 63 tokens to every session and 2,246 once invoked, about $0.0003 per session on Opus 5.5. A static security scan graded it A with 0 findings. It is 86% identical to pinecone, differing in 61 lines, and is treated as a copy.
Other skills, from other repositories
pinecone
Managed vector database for production AI applications. Fully managed, auto-scaling, with hybrid search (dense + sparse), metadata filtering, and namespaces. Low latency (<100ms p95). Use for production RAG, recommendation systems, or semantic search at scale. Best for serverless, managed infrastructure.
pinecone
Managed vector database for production AI applications. Fully managed, auto-scaling, with hybrid search (dense + sparse), metadata filtering, and namespaces. Low latency (<100ms p95). Use for production RAG, recommendation systems, or semantic search at scale. Best for serverless, managed infrastructure.
pinecone
Managed vector database for production AI applications. Fully managed, auto-scaling, with hybrid search (dense + sparse), metadata filtering, and namespaces. Low latency (<100ms p95). Use for production RAG, recommendation systems, or semantic search at scale. Best for serverless, managed infrastructure.
pinecone
Managed vector database for production AI applications. Fully managed, auto-scaling, with hybrid search (dense + sparse), metadata filtering, and namespaces. Low latency (<100ms p95). Use for production RAG, recommendation systems, or semantic search at scale. Best for serverless, managed infrastructure.
pinecone
Managed vector database for production AI applications. Fully managed, auto-scaling, with hybrid search (dense + sparse), metadata filtering, and namespaces. Low latency (<100ms p95). Use for production RAG, recommendation systems, or semantic search at scale. Best for serverless, managed infrastructure.
vector-databases
Vector database engineering covering Pinecone, Weaviate, Chroma, Qdrant, pgvector, and FAISS — including embedding pipeline design, HNSW index parameter tuning, hybrid dense+sparse (BM25) search, metadata filtering, namespace and tenant sharding, and RAG retrieval patterns for production knowledge systems.