Hypergraph-Coding-Agent-Framework: Skill for Claude Code

.agents/skills/hyper-refresh-memory/SKILL.md

refresh-memory is a skill for Claude Code, Codex from tjmustard/Hypergraph-Coding-Agent-Framework. It costs 48 tokens per session (556 once invoked), scanned A, original, MIT.

A project-refreshing workflow that reads the codebase, project rules, documentation, and saved notes to rebuild an accurate understanding of the current system. It then updates the project’s memory files.

In plain words
What is it for?
Starting work after a break, checking whether the documented architecture still matches the code, and updating memory after significant changes.
Why use it?
Saved notes and documentation can become stale after long gaps or major refactors. This helps the coding agent work from the project’s current state.

Skill for Claude CodeCodex

Written for no agent in particular: nothing here depends on one. Also seen: installed under .agents/ (shared by several agents).

This is tjmustard/Hypergraph-Coding-Agent-Framework's own configuration. It tells Claude Code and Codex how to work on Hypergraph-Coding-Agent-Framework itself, so it is not a mod to install elsewhere. Copy it as a starting point and replace the rules that are about this project. Everything Hypergraph-Coding-Agent-Framework configures →

Reuse

Borrowing it

Nothing to install: this file belongs to tjmustard/Hypergraph-Coding-Agent-Framework. Take a copy, put it at the same path in your own repository, and replace the rules that are about this project with yours.

Copy the file
curl -O https://raw.githubusercontent.com/tjmustard/Hypergraph-Coding-Agent-Framework/main/.agents/skills/hyper-refresh-memory/SKILL.md
Clone the repo
git clone --depth 1 https://github.com/tjmustard/Hypergraph-Coding-Agent-Framework

Made for: Claude Code, Codex.

Wrote this? Show the measurements

A badge with what this costs and how it scanned, read live from this page, so it follows the numbers instead of freezing them. Markdown for a README, HTML for a documentation site or a project page.

agentmods badge for refresh-memory

README.md
[![agentmods](https://agentmods.dev/badge/skills/tjmustard/hypergraph-coding-agent-framework/hyper-refresh-memory/github.svg)](https://agentmods.dev/skills/tjmustard/hypergraph-coding-agent-framework/hyper-refresh-memory)
Your own site
<a href="https://agentmods.dev/skills/tjmustard/hypergraph-coding-agent-framework/hyper-refresh-memory"><img src="https://agentmods.dev/badge/skills/tjmustard/hypergraph-coding-agent-framework/hyper-refresh-memory/github.svg" alt="Measured on agentmods" height="20"></a>

Or the 80×15 button, for a site that already has a row of RSS and ATOM ones. Only the verdict fits; the numbers stay here.

agentmods 80×15 button for refresh-memory

Your own site · 80×15
<a href="https://agentmods.dev/skills/tjmustard/hypergraph-coding-agent-framework/hyper-refresh-memory"><img src="https://agentmods.dev/badge/skills/tjmustard/hypergraph-coding-agent-framework/hyper-refresh-memory.svg" alt="Reviewed on agentmods" width="80" height="20"></a>
Per session 48 Skills are progressive disclosure: only the name and description are preloaded; the body loads when the skill is used.
When invoked 556 The whole file, excluding the scripts and references it only reads on demand.
Security scan A 0 findings. A grade says what 26 rules found in the file — not that it is safe.
Origin original No closer match found in the catalogue.
Token cost

What it costs to keep this loaded

Counted locally with the o200k_base tokenizer, which is exact for GPT models; Claude uses its own tokenizer and its counts differ. Treat this as one consistent yardstick across the catalogue rather than a bill. Prices are per million input tokens.

ModelPer sessionOnce invoked
Fable 5.1 $0.00048 $0.00556
Opus 5.5 $0.00019 $0.00222
Sonnet 5.5 $0.00010 $0.00111
Haiku 4.5 $0.00005 $0.00056

Measured 2mo ago against content hash 0afe662ffc5a, method: parsed. Prices are Anthropic first-party input rates as of 2026-10-07, from the pricing page.

Security

Grade A, and why

refresh-memory scanned grade A with 0 findings against 26 rules in 11 categories — prompt injection, anti-refusal, data exfiltration, privilege escalation, supply chain, agent snooping, system-prompt leakage, SSRF and excessive agency — measured 2mo ago.

A static scan of the body, not an audit. Every finding is printed with the line that produced it so you can judge whether it matters here. A mod is markdown that instructs an agent; that is exactly why what it instructs is worth reading.

Nothing flagged

None of the 26 patterns this scan looks for appear in this file: no shell pipes, no recursive deletes, no credential paths, no hidden text, no instruction-override or anti-refusal phrasing, no agent-config snooping. That is not a guarantee, it is the absence of the things that are checkable.

.agents/skills/hyper-refresh-memory/SKILL.md · 45 lines

How it starts

The opening of the file, as written. The whole thing — 45 lines — stays where its author put it; the contents beside it link to each section on GitHub.

Refresh Memory

This skill rebuilds the agent's mental model of the project by reading deterministic state, exploring the actual codebase, and updating the heuristic memory files to reflect current reality.

When to use this skill

  • When starting a new session after a significant gap in development.
  • When the agent's responses seem to reference outdated architecture or patterns.
  • When the user explicitly runs /hyper-refresh-memory.
  • After major refactors that may have drifted from documented patterns.

How to use it

  1. Read Baseline State

    • Read the deterministic state: spec/compiled/architecture.yml (the Hypergraph).
    • Read the compiled specifications: spec/compiled/SuperPRD.md and all MiniPRD_*.md files.
    • Read all files in .agents/memory/ and .agents/rules/.
  2. Explore the Current Codebase

    • Use directory listing to get a high-level view of the project structure (src/, tests/, etc.).
    • Use search and file reading to inspect key files and understand implementation details.
    • Goal: Build a fresh mental model of the actual codebase state vs. what the Hypergraph currently documents.
  3. Synthesize Findings

    • Compare your exploration findings with the current memory state.
    • Identify discrepancies (e.g., deprecated dependencies still mentioned, new patterns not documented, renamed files).
  4. Refresh the Memory Files

    • activeContext.md: Update with the current development focus, recent changes, and immediate next steps.
    • systemPatterns.md: Update with new recurring patterns. Remove replaced ones. Document the actual architecture.
    • productContext.md: Update if product goals have evolved or features have changed.
  5. Sync Documentation

    • If abstract patterns or rules are outdated, update .agents/memory/systemPatterns.md or the relevant .agents/rules/ file.
    • CRITICAL: Do NOT manually edit architecture.yml. If the Hypergraph is out of sync with reality, instruct the user to run /hyper-discover or /hyper-audit to deterministically reconcile it.

Read the full file on GitHub · 45 lines

Changes

What this file has done since we first saw it

Hashed on every crawl. A supply-chain change to an agent config is a question of when, not whether, so the history is kept rather than the latest state alone.

  1. 2mo ago First seen · 45 lines · 48 tokens per session scan A 0afe662ffc5a

Subscribe to this mod's changes

refresh-memory is a skill published in the GitHub repository tjmustard/Hypergraph-Coding-Agent-Framework (2 stars, last pushed 1mo ago), licensed MIT. It adds 48 tokens to every session and 556 once invoked, about $0.0002 per session on Opus 5.5. A static security scan graded it A with 0 findings. No closer match exists in the catalogue, so it is treated as the original; first seen 2026-08-31.

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