Getting it into your agent
One page per mod, every tool's command on it. A separate URL per tool would split the same page into five that compete with each other.
npx agentmods add skills/tjmustard/hypergraph-coding-agent-framework/hyper-updatenpx skills add tjmustard/Hypergraph-Coding-Agent-Framework --skill hyper-updategit clone --depth 1 https://github.com/tjmustard/Hypergraph-Coding-Agent-FrameworkWhat it costs to keep this loaded
Counted locally with the o200k_base tokenizer, which is exact for GPT models; Claude uses its own tokenizer and its counts differ. Treat this as one consistent yardstick across the catalogue rather than a bill. Prices are per million input tokens.
| Model | Per session | Once invoked |
|---|---|---|
| Fable 5 | $0.00052 | $0.01702 |
| Opus 5 | $0.00026 | $0.00851 |
| Sonnet 5 | $0.00010 | $0.00340 |
| Haiku 4.5 | $0.00005 | $0.00170 |
Grade A, and why
update scanned grade A with 0 findings against 26 rules in 11 categories — prompt injection, anti-refusal, data exfiltration, privilege escalation, supply chain, agent snooping, system-prompt leakage, SSRF and excessive agency — measured yesterday.
A static scan of the body, not an audit. Every finding is printed with the line that produced it so you can judge whether it matters here. A mod is markdown that instructs an agent; that is exactly why what it instructs is worth reading.
Nothing flagged
None of the 26 patterns this scan looks for appear in this file: no shell pipes, no recursive deletes, no credential paths, no hidden text, no instruction-override or anti-refusal phrasing, no agent-config snooping. That is not a guarantee, it is the absence of the things that are checkable.
How it starts
The opening of the file, as written. The whole thing — 178 lines — stays where its author put it; the contents beside it link to each section on GitHub.
ROLE: The Upgrade Agent
Your objective is to safely upgrade the local Hypergraph Coding Agent Framework installation while preserving user customizations. You act as a careful, non-destructive upgrade orchestrator.
CRITICAL RULES
- Never mutate without backup. Before replacing or merging ANY file, create
.agents/.backup/YYYY-MM-DD/(timestamped directory) and copy the original file there first. - Section-by-section approval gate. When merging, do NOT advance to the next
###section until the user provides explicit approval of the current section. Approval is explicit: accept upstream, keep local, or edit manually — each must be confirmed by the user. - Smart file categorization. Sensitive customizable files (CLAUDE.md, AGENTS.md, rules files) require merge/replace/skip prompts. Non-sensitive files (.agents/ skill implementations, spec/, tests/) are auto-updated silently.
EXECUTION PHASES
[PHASE 1: Preflight & Fetch]
Objective: Prepare the upgrade environment.
Action:
- Verify git is available (
git --version). - Fetch the upstream repository into a temp directory:
git clone --depth=1 --branch main https://github.com/tjmustard/Hypergraph-Coding-Agent-Framework.git /tmp/hcaf-upstream-$(date +%s) - Report: "Upstream fetched successfully. Scanning for changes..."
- Do NOT yet create the backup directory — only create it when the first file is actually replaced/merged.
[PHASE 2: Auto-Update Non-Sensitive Files]
Objective: Update framework core files without user interaction.
Action:
Silently copy these directories from upstream, if changed:
.agents/skills/(all skill SKILL.md files).agents/scripts/(Python scripts).agents/schemas/(schema definitions)spec/(specification templates)tests/(test fixtures, candidate outputs).agentignore
Report: "✅ Auto-updated: .agents/skills/, .agents/scripts/, spec/, tests/, .agentignore" (no individual prompts).
What ships with it
1 file beside SKILL.md in the same directory: the scripts, references and assets a skill reads on demand. Not counted in the per-session cost; read them before you install if any of them is executable.
What this file has done since we first saw it
Hashed on every crawl. A supply-chain change to an agent config is a question of when, not whether, so the history is kept rather than the latest state alone.
- yesterday First seen · 178 lines · 52 tokens per session scan A 2de65ee56c4b
update is a skill published in the GitHub repository tjmustard/Hypergraph-Coding-Agent-Framework (2 stars, last pushed 1mo ago), licensed MIT. It adds 52 tokens to every session and 1,702 once invoked, about $0.0003 per session on Opus 5. A static security scan graded it A with 0 findings. No closer match exists in the catalogue, so it is treated as the original; first seen 2026-08-31.
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