med-paper-assistant: Skill for Claude Code

.claude/skills/literature-review/SKILL.md

literature-review is a skill for Claude Code from u9401066/med-paper-assistant. It costs 77 tokens per session (1,564 once invoked), scanned A, original, Apache-2.0.

A systematic literature-review workflow for finding, screening, downloading, organising, and exporting research papers. It supports clinical questions, citation networks, open-access full text, PDF structure, and extracted document assets.

In plain words
What is it for?
Use it to build search queries, parse PICO questions, find related or citing articles, retrieve full text, check open-access availability, extract sections or figures from PDFs, and export references as RIS or BibTeX.
Why use it?
It replaces a collection of separate search and document-handling steps with one organised process. It helps track search sessions, remove duplicate papers, and inspect the structure of downloaded documents.

Skill for Claude Code

Written for Claude Code: installed under .claude/. Also seen: mentions subagents.

This is u9401066/med-paper-assistant's own configuration. It tells Claude Code how to work on med-paper-assistant itself, so it is not a mod to install elsewhere. Copy it as a starting point and replace the rules that are about this project. Everything med-paper-assistant configures →

Reuse

Borrowing it

Nothing to install: this file belongs to u9401066/med-paper-assistant. Take a copy, put it at the same path in your own repository, and replace the rules that are about this project with yours.

Copy the file
curl -O https://raw.githubusercontent.com/u9401066/med-paper-assistant/master/.claude/skills/literature-review/SKILL.md
Clone the repo
git clone --depth 1 https://github.com/u9401066/med-paper-assistant

Made for: Claude Code.

Wrote this? Show the measurements

A badge with what this costs and how it scanned, read live from this page, so it follows the numbers instead of freezing them. Markdown for a README, HTML for a documentation site or a project page.

agentmods badge for literature-review

README.md
[![agentmods](https://agentmods.dev/badge/skills/u9401066/med-paper-assistant/literature-review/github.svg)](https://agentmods.dev/skills/u9401066/med-paper-assistant/literature-review)
Your own site
<a href="https://agentmods.dev/skills/u9401066/med-paper-assistant/literature-review"><img src="https://agentmods.dev/badge/skills/u9401066/med-paper-assistant/literature-review/github.svg" alt="Measured on agentmods" height="20"></a>

Or the 80×15 button, for a site that already has a row of RSS and ATOM ones. Only the verdict fits; the numbers stay here.

agentmods 80×15 button for literature-review

Your own site · 80×15
<a href="https://agentmods.dev/skills/u9401066/med-paper-assistant/literature-review"><img src="https://agentmods.dev/badge/skills/u9401066/med-paper-assistant/literature-review.svg" alt="Reviewed on agentmods" width="80" height="20"></a>
Per session 77 Skills are progressive disclosure: only the name and description are preloaded; the body loads when the skill is used.
When invoked 1,564 The whole file, excluding the scripts and references it only reads on demand.
Security scan A 0 findings. A grade says what 26 rules found in the file — not that it is safe.
Origin original No closer match found in the catalogue.
Token cost

What it costs to keep this loaded

Counted locally with the o200k_base tokenizer, which is exact for GPT models; Claude uses its own tokenizer and its counts differ. Treat this as one consistent yardstick across the catalogue rather than a bill. Prices are per million input tokens.

ModelPer sessionOnce invoked
Fable 5.1 $0.00077 $0.01564
Opus 5 $0.00039 $0.00782
Sonnet 5 $0.00015 $0.00313
Haiku 4.5 $0.00008 $0.00156

Measured 12d ago against content hash 2eeb4dec7d7b, method: parsed. Prices are Anthropic first-party input rates as of 2026-09-12, from the pricing page.

Security

Grade A, and why

literature-review scanned grade A with 0 findings against 26 rules in 11 categories — prompt injection, anti-refusal, data exfiltration, privilege escalation, supply chain, agent snooping, system-prompt leakage, SSRF and excessive agency — measured 12d ago.

A static scan of the body, not an audit. Every finding is printed with the line that produced it so you can judge whether it matters here. A mod is markdown that instructs an agent; that is exactly why what it instructs is worth reading.

Nothing flagged

None of the 26 patterns this scan looks for appear in this file: no shell pipes, no recursive deletes, no credential paths, no hidden text, no instruction-override or anti-refusal phrasing, no agent-config snooping. That is not a guarantee, it is the absence of the things that are checkable.

.claude/skills/literature-review/SKILL.md · 85 lines

How it starts

The opening of the file, as written. The whole thing — 85 lines — stays where its author put it; the contents beside it link to each section on GitHub.

系統性文獻回顧

適用:新研究專案 | Introduction 前調查 | 系統性回顧 | PICO 臨床問題 不適用:快速查一篇 → 直接 unified_search | 只需整理 → format_references


工具速查

pubmed-search MCP

類別 工具 說明
搜尋 unified_search 主要文獻搜尋入口
generate_search_queries MeSH + 同義詞材料
parse_pico 解析 PICO 臨床問題
read_session(action="pmids") 取回 PMID + 去重
探索 find_related_articles / find_citing_articles / get_article_references 引用網路
get_citation_metrics iCite RCR 排序
全文 get_fulltext(pmcid) 取得 OA 全文
analyze_fulltext_access(pmids) 確認 OA 狀態
Session read_session(action="pmids") / get_session_log 取回搜尋結果
匯出 prepare_export RIS/BibTeX

asset-aware-mcp(全文解析)

類別 工具 說明
解析 ingest_documents(file_paths) PDF 結構化解析(雙引擎)
parse_pdf_structure(file_path) Marker 高精度解析
狀態 get_job_status(job_id) 追蹤非同步處理進度
瀏覽 inspect_document_manifest(doc_id) 取得完整資產清單
list_section_tree(doc_id) 文件章節結構
提取 get_section_content(doc_id, section_path) 取得特定段落內容
fetch_document_asset(doc_id, asset_type, asset_id) 取得圖表等資產
知識圖 consult_knowledge_graph(query) 跨文獻 RAG 查詢

Read the full file on GitHub · 85 lines

Changes

What this file has done since we first saw it

Hashed on every crawl. A supply-chain change to an agent config is a question of when, not whether, so the history is kept rather than the latest state alone.

  1. 12d ago First seen · 85 lines · 77 tokens per session scan A 2eeb4dec7d7b

Subscribe to this mod's changes

literature-review is a skill published in the GitHub repository u9401066/med-paper-assistant (12 stars, last pushed 11d ago), licensed Apache-2.0. It adds 77 tokens to every session and 1,564 once invoked, about $0.0004 per session on Opus 5. A static security scan graded it A with 0 findings. No closer match exists in the catalogue, so it is treated as the original; first seen 2026-08-30.

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