med-paper-assistant: Skill for Claude Code

.claude/skills/pubmed-fulltext-access/SKILL.md

pubmed-fulltext-access is a skill for Claude Code from u9401066/med-paper-assistant. It costs 45 tokens per session (1,125 once invoked), scanned A, original, Apache-2.0.

A tool guide for finding and retrieving the full text of research papers, including open-access copies, selected sections, figures, and text-mined terms. Europe PMC, Unpaywall, and CORE are services that help locate scientific papers and their available full text.

In plain words
What is it for?
Use it with a DOI, PubMed ID, or PMC ID to retrieve papers, methods or results sections, PDF links, figure information, or text-mining data.
Why use it?
It avoids searching several paper repositories by hand and can narrow a paper to the parts or visual material you need.

Skill for Claude Code

Written for Claude Code: installed under .claude/.

This is u9401066/med-paper-assistant's own configuration. It tells Claude Code how to work on med-paper-assistant itself, so it is not a mod to install elsewhere. Copy it as a starting point and replace the rules that are about this project. Everything med-paper-assistant configures →

Reuse

Borrowing it

Nothing to install: this file belongs to u9401066/med-paper-assistant. Take a copy, put it at the same path in your own repository, and replace the rules that are about this project with yours.

Copy the file
curl -O https://raw.githubusercontent.com/u9401066/med-paper-assistant/master/.claude/skills/pubmed-fulltext-access/SKILL.md
Clone the repo
git clone --depth 1 https://github.com/u9401066/med-paper-assistant

Made for: Claude Code.

Wrote this? Show the measurements

A badge with what this costs and how it scanned, read live from this page, so it follows the numbers instead of freezing them. Markdown for a README, HTML for a documentation site or a project page.

agentmods badge for pubmed-fulltext-access

README.md
[![agentmods](https://agentmods.dev/badge/skills/u9401066/med-paper-assistant/pubmed-fulltext-access/github.svg)](https://agentmods.dev/skills/u9401066/med-paper-assistant/pubmed-fulltext-access)
Your own site
<a href="https://agentmods.dev/skills/u9401066/med-paper-assistant/pubmed-fulltext-access"><img src="https://agentmods.dev/badge/skills/u9401066/med-paper-assistant/pubmed-fulltext-access/github.svg" alt="Measured on agentmods" height="20"></a>

Or the 80×15 button, for a site that already has a row of RSS and ATOM ones. Only the verdict fits; the numbers stay here.

agentmods 80×15 button for pubmed-fulltext-access

Your own site · 80×15
<a href="https://agentmods.dev/skills/u9401066/med-paper-assistant/pubmed-fulltext-access"><img src="https://agentmods.dev/badge/skills/u9401066/med-paper-assistant/pubmed-fulltext-access.svg" alt="Reviewed on agentmods" width="80" height="20"></a>
Per session 45 Skills are progressive disclosure: only the name and description are preloaded; the body loads when the skill is used.
When invoked 1,125 The whole file, excluding the scripts and references it only reads on demand.
Security scan A 0 findings. A grade says what 26 rules found in the file — not that it is safe. Third-party audits
  • NVIDIA SkillSpector pass 7 Sept 2026
How audits are shown
Origin original No closer match found in the catalogue.
Token cost

What it costs to keep this loaded

Counted locally with the o200k_base tokenizer, which is exact for GPT models; Claude uses its own tokenizer and its counts differ. Treat this as one consistent yardstick across the catalogue rather than a bill. Prices are per million input tokens.

ModelPer sessionOnce invoked
Fable 5.1 $0.00045 $0.01125
Opus 5 $0.00023 $0.00562
Sonnet 5 $0.00009 $0.00225
Haiku 4.5 $0.00005 $0.00112

Measured 11d ago against content hash 4fa89e05d658, method: parsed. Prices are Anthropic first-party input rates as of 2026-09-11, from the pricing page.

Security

Grade A, and why

pubmed-fulltext-access scanned grade A with 0 findings against 26 rules in 11 categories — prompt injection, anti-refusal, data exfiltration, privilege escalation, supply chain, agent snooping, system-prompt leakage, SSRF and excessive agency — measured 11d ago.

A static scan of the body, not an audit. Every finding is printed with the line that produced it so you can judge whether it matters here. A mod is markdown that instructs an agent; that is exactly why what it instructs is worth reading.

Nothing flagged

None of the 26 patterns this scan looks for appear in this file: no shell pipes, no recursive deletes, no credential paths, no hidden text, no instruction-override or anti-refusal phrasing, no agent-config snooping. That is not a guarantee, it is the absence of the things that are checkable.

Origin

Copies of this mod

3 near-identical copies found in the catalogue:

.claude/skills/pubmed-fulltext-access/SKILL.md · 189 lines

How it starts

The opening of the file, as written. The whole thing — 189 lines — stays where its author put it; the contents beside it link to each section on GitHub.

全文取得指南

描述

目前的全文 workflow 以 get_fulltext 為核心。它會自動嘗試 Europe PMC、Unpaywall、CORE,必要時可擴展到更多來源。若需要圖表、文字探勘或機構訂閱連結,則搭配其他專用工具。

觸發條件

  • 「我要看全文」
  • 「有 PDF 嗎?」
  • 「這篇有 open access 嗎?」
  • 「幫我抓方法或結果段落」
  • 提到 PMC、全文、PDF、開放取用

核心工具

1. get_fulltext

get_fulltext(identifier="PMC7096777")
get_fulltext(pmid="12345678")
get_fulltext(doi="10.1038/s41586-021-03819-2")

參數重點

  • identifier: 自動判斷 PMID、PMCID、DOI
  • pmcid / pmid / doi: 也可分開傳
  • sections: 只抓特定段落,例如 "introduction,methods,results"
  • include_pdf_links: 是否回傳 PDF 連結
  • include_figures: 是否一起帶 figure metadata
  • extended_sources: 是否擴展到更多來源

最常用範例

1. 直接抓 PMC 全文

get_fulltext(identifier="PMC7096777")

2. 只看方法與結果

get_fulltext(
    pmid="12345678",
    sections="methods,results"
)

3. 用 DOI 找 OA 版本

get_fulltext(
    doi="10.1038/s41586-021-03819-2",
    extended_sources=True
)

4. 全文連同 figures

get_fulltext(
    pmcid="PMC7096777",
    include_figures=True
)

圖表與視覺資料

取得文章圖表

get_article_figures(identifier="PMC12086443")
get_article_figures(pmid="40384072")

適合用在:

  • 要單獨抽 figure caption 與 image URL
  • 想快速找到流程圖、結果圖、顯微圖
  • 需要比全文更結構化的圖像資料

文字探勘

取得 text-mined terms

get_text_mined_terms(pmcid="PMC7096777")
get_text_mined_terms(pmid="12345678", semantic_type="CHEMICAL")

常用 semantic_type:

  • GENE_PROTEIN
  • DISEASE
  • CHEMICAL
  • ORGANISM
  • GO_TERM

沒有 open access 時

機構訂閱工作流

list_resolver_presets()
configure_institutional_access(preset="exlibris_sfx", base_url="https://your-library...")
test_institutional_access()
get_institutional_link(pmid="12345678")

這一組工具適合:

  • 已知機構有訂閱,但文章不是 OA
  • 想把 PubMed/DOI 轉成圖書館 resolver 連結

建議工作流程

情境 1:從文章直接拿全文

fetch_article_details(pmids="12345678")
get_fulltext(pmid="12345678", sections="abstract,results")

情境 2:搜尋後挑代表性文章讀全文

unified_search(
    query="remimazolam ICU sedation",
    limit=10,
    ranking="quality"
)

# 對選中的 PMID 再做全文抓取
get_fulltext(pmid="12345678", extended_sources=True)

Read the full file on GitHub · 189 lines

Changes

What this file has done since we first saw it

Hashed on every crawl. A supply-chain change to an agent config is a question of when, not whether, so the history is kept rather than the latest state alone.

  1. 11d ago First seen · 189 lines · 45 tokens per session scan A 4fa89e05d658

Subscribe to this mod's changes

pubmed-fulltext-access is a skill published in the GitHub repository u9401066/med-paper-assistant (12 stars, last pushed 10d ago), licensed Apache-2.0. It adds 45 tokens to every session and 1,125 once invoked, about $0.0002 per session on Opus 5. A static security scan graded it A with 0 findings. No closer match exists in the catalogue, so it is treated as the original; first seen 2026-08-30.

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