Borrowing it
Nothing to install: this file belongs to u9401066/med-paper-assistant. Take a copy, put it at the same path in your own repository, and replace the rules that are about this project with yours.
curl -O https://raw.githubusercontent.com/u9401066/med-paper-assistant/master/.claude/skills/reference-management/SKILL.mdgit clone --depth 1 https://github.com/u9401066/med-paper-assistantWrote this? Show the measurements
A badge with what this costs and how it scanned, read live from this page, so it follows the numbers instead of freezing them. Markdown for a README, HTML for a documentation site or a project page.
[](https://agentmods.dev/skills/u9401066/med-paper-assistant/reference-management)<a href="https://agentmods.dev/skills/u9401066/med-paper-assistant/reference-management"><img src="https://agentmods.dev/badge/skills/u9401066/med-paper-assistant/reference-management/github.svg" alt="Measured on agentmods" height="20"></a>Or the 80×15 button, for a site that already has a row of RSS and ATOM ones. Only the verdict fits; the numbers stay here.
<a href="https://agentmods.dev/skills/u9401066/med-paper-assistant/reference-management"><img src="https://agentmods.dev/badge/skills/u9401066/med-paper-assistant/reference-management.svg" alt="Reviewed on agentmods" width="80" height="20"></a>What it costs to keep this loaded
Counted locally with the o200k_base tokenizer, which is exact for GPT models; Claude uses its own tokenizer and its counts differ. Treat this as one consistent yardstick across the catalogue rather than a bill. Prices are per million input tokens.
| Model | Per session | Once invoked |
|---|---|---|
| Fable 5.1 | $0.00022 | $0.00752 |
| Opus 5.5 | $0.00009 | $0.00301 |
| Sonnet 5.5 | $0.00004 | $0.00150 |
| Haiku 4.5 | $0.00002 | $0.00075 |
Grade A, and why
reference-management scanned grade A with 0 findings against 26 rules in 11 categories — prompt injection, anti-refusal, data exfiltration, privilege escalation, supply chain, agent snooping, system-prompt leakage, SSRF and excessive agency — measured 1mo ago.
A static scan of the body, not an audit. Every finding is printed with the line that produced it so you can judge whether it matters here. A mod is markdown that instructs an agent; that is exactly why what it instructs is worth reading.
Nothing flagged
None of the 26 patterns this scan looks for appear in this file: no shell pipes, no recursive deletes, no credential paths, no hidden text, no instruction-override or anti-refusal phrasing, no agent-config snooping. That is not a guarantee, it is the absence of the things that are checkable.
How it starts
The opening of the file, as written. The whole thing — 59 lines — stays where its author put it; the contents beside it link to each section on GitHub.
Reference Management Skill
觸發：存這篇、save、儲存文獻、列出 references、citation、格式化、PDF、foam、wikilink
🔒 核心規則：MCP-to-MCP 優先
| 方法 | 資料來源 | 使用時機 |
|---|---|---|
save_reference_mcp(pmid) |
pubmed-search API 直取 | 永遠優先 |
save_reference(article) |
Agent 傳遞 metadata | 僅 API 不可用時 fallback |
信任層：🔒 VERIFIED（PubMed 原始）→ 🤖 AGENT（agent_notes）→ ✏️ USER（人類筆記，AI 不碰）
MCP Tools
| 工具 | 用途 | 關鍵參數 |
|---|---|---|
save_reference_mcp ⭐ |
用 PMID 儲存（推薦） | pmid, agent_notes?, project? |
save_reference |
API 不可用時備援 | article (dict), agent_notes? |
list_saved_references |
列出所有已儲存文獻 | project? |
search_local_references |
在已存文獻中搜尋 | query |
get_reference_details |
取得單篇完整資訊+格式化引用 | pmid |
check_reference_exists |
檢查是否已儲存 | pmid |
read_reference_fulltext |
讀取已下載 PDF | pmid, max_chars? (預設 10000) |
format_references |
格式化引用清單 | pmids (逗號分隔), style?, journal? |
set_citation_style |
設定預設引用格式 | style (vancouver/apa/harvard/nature/ama) |
rebuild_foam_aliases |
重建 Foam wikilink 檔案 | project? |
標準工作流
pubmed-search搜尋文獻- 用戶選擇要儲存的文獻
save_reference_mcp(pmid="...")→ 成功則完成- 失敗 → 改用
save_reference(article={...})
agent_notes 指南
好："Key SR on remimazolam safety. Covers: CV stability, respiratory effects. Limitation: only ICU."
壞："重要文獻" ← 太模糊。應包含：關聯性、關鍵發現、方法學優缺、可引用數據。
What this file has done since we first saw it
Hashed on every crawl. A supply-chain change to an agent config is a question of when, not whether, so the history is kept rather than the latest state alone.
- 1mo ago First seen · 59 lines · 22 tokens per session scan A 20379b3f13e2
reference-management is a skill published in the GitHub repository u9401066/med-paper-assistant (12 stars, last pushed 1mo ago), licensed Apache-2.0. It adds 22 tokens to every session and 752 once invoked, about $0.0001 per session on Opus 5.5. A static security scan graded it A with 0 findings. No closer match exists in the catalogue, so it is treated as the original; first seen 2026-08-30.
Other skills, from other repositories
read
Read PDF page by page with structured output — key arguments, terms glossary, thesis connections. Use when reading academic papers, books, or articles.
release-governance
Use when preparing, auditing, releasing, PDF-hardening, or rebuttal-hardening academic manuscripts, datasets, artifacts, reviewer packets, or claim registers involving multiple refs, local assets, human labels, agent-assisted drafts, wide tables, figure provenance, submission PDFs, or evidence-boundary checks.
export
Convert thesis chapters and reading notes from Markdown to Word (.docx) and package for submission. Use when preparing materials for supervisors or examiners.
human-eval-handoff-repair
Use when validating, repairing, or mapping human-evaluation handoff packages, filled annotation CSVs, rebuttal annotation UIs, or reviewer annotation returns across package versions. Applies to checking row alignment, detecting cross-snapshot contamination, converting old labels to current schemas, generating…
proposal-import
Import an existing proposal (usually PDF) into the standard single-file format — extract text and references, strip personal data, mark gaps. Use when the user has a draft from Word, LaTeX, Overleaf or another tool, pastes the text of an older proposal, or wants to carry existing work over and continue it here.
proposal-publish
Build a PDF (or docx fallback) from a proposal file via pandoc — compact layout, typst-first, with install guidance when tools are missing. Also offers a stripped hand-in export, and hands over to a workspace build script where one exists. Use when the user wants a PDF or something to email, print or hand to their…