Borrowing it
Nothing to install: this file belongs to u9401066/med-paper-assistant. Take a copy, put it at the same path in your own repository, and replace the rules that are about this project with yours.
curl -O https://raw.githubusercontent.com/u9401066/med-paper-assistant/master/.claude/skills/reference-management/SKILL.mdgit clone --depth 1 https://github.com/u9401066/med-paper-assistantWrote this? Show the measurements
A badge with what this costs and how it scanned, read live from this page, so it follows the numbers instead of freezing them. Markdown for a README, HTML for a documentation site or a project page.
[](https://agentmods.dev/skills/u9401066/med-paper-assistant/reference-management)<a href="https://agentmods.dev/skills/u9401066/med-paper-assistant/reference-management"><img src="https://agentmods.dev/badge/skills/u9401066/med-paper-assistant/reference-management/github.svg" alt="Measured on agentmods" height="20"></a>Or the 80×15 button, for a site that already has a row of RSS and ATOM ones. Only the verdict fits; the numbers stay here.
<a href="https://agentmods.dev/skills/u9401066/med-paper-assistant/reference-management"><img src="https://agentmods.dev/badge/skills/u9401066/med-paper-assistant/reference-management.svg" alt="Reviewed on agentmods" width="80" height="20"></a>What it costs to keep this loaded
Counted locally with the o200k_base tokenizer, which is exact for GPT models; Claude uses its own tokenizer and its counts differ. Treat this as one consistent yardstick across the catalogue rather than a bill. Prices are per million input tokens.
| Model | Per session | Once invoked |
|---|---|---|
| Fable 5.1 | $0.00022 | $0.00752 |
| Opus 5 | $0.00011 | $0.00376 |
| Sonnet 5 | $0.00004 | $0.00150 |
| Haiku 4.5 | $0.00002 | $0.00075 |
Grade A, and why
reference-management scanned grade A with 0 findings against 26 rules in 11 categories — prompt injection, anti-refusal, data exfiltration, privilege escalation, supply chain, agent snooping, system-prompt leakage, SSRF and excessive agency — measured 8d ago.
A static scan of the body, not an audit. Every finding is printed with the line that produced it so you can judge whether it matters here. A mod is markdown that instructs an agent; that is exactly why what it instructs is worth reading.
Nothing flagged
None of the 26 patterns this scan looks for appear in this file: no shell pipes, no recursive deletes, no credential paths, no hidden text, no instruction-override or anti-refusal phrasing, no agent-config snooping. That is not a guarantee, it is the absence of the things that are checkable.
How it starts
The opening of the file, as written. The whole thing — 59 lines — stays where its author put it; the contents beside it link to each section on GitHub.
Reference Management Skill
觸發：存這篇、save、儲存文獻、列出 references、citation、格式化、PDF、foam、wikilink
🔒 核心規則：MCP-to-MCP 優先
| 方法 | 資料來源 | 使用時機 |
|---|---|---|
save_reference_mcp(pmid) |
pubmed-search API 直取 | 永遠優先 |
save_reference(article) |
Agent 傳遞 metadata | 僅 API 不可用時 fallback |
信任層：🔒 VERIFIED（PubMed 原始）→ 🤖 AGENT（agent_notes）→ ✏️ USER（人類筆記，AI 不碰）
MCP Tools
| 工具 | 用途 | 關鍵參數 |
|---|---|---|
save_reference_mcp ⭐ |
用 PMID 儲存（推薦） | pmid, agent_notes?, project? |
save_reference |
API 不可用時備援 | article (dict), agent_notes? |
list_saved_references |
列出所有已儲存文獻 | project? |
search_local_references |
在已存文獻中搜尋 | query |
get_reference_details |
取得單篇完整資訊+格式化引用 | pmid |
check_reference_exists |
檢查是否已儲存 | pmid |
read_reference_fulltext |
讀取已下載 PDF | pmid, max_chars? (預設 10000) |
format_references |
格式化引用清單 | pmids (逗號分隔), style?, journal? |
set_citation_style |
設定預設引用格式 | style (vancouver/apa/harvard/nature/ama) |
rebuild_foam_aliases |
重建 Foam wikilink 檔案 | project? |
標準工作流
pubmed-search搜尋文獻- 用戶選擇要儲存的文獻
save_reference_mcp(pmid="...")→ 成功則完成- 失敗 → 改用
save_reference(article={...})
agent_notes 指南
好："Key SR on remimazolam safety. Covers: CV stability, respiratory effects. Limitation: only ICU."
壞："重要文獻" ← 太模糊。應包含：關聯性、關鍵發現、方法學優缺、可引用數據。
What this file has done since we first saw it
Hashed on every crawl. A supply-chain change to an agent config is a question of when, not whether, so the history is kept rather than the latest state alone.
- 8d ago First seen · 59 lines · 22 tokens per session scan A 20379b3f13e2
reference-management is a skill published in the GitHub repository u9401066/med-paper-assistant (12 stars, last pushed 7d ago), licensed Apache-2.0. It adds 22 tokens to every session and 752 once invoked, about $0.0001 per session on Opus 5. A static security scan graded it A with 0 findings. No closer match exists in the catalogue, so it is treated as the original; first seen 2026-08-30.
Other skills, from other repositories
release-governance
Use when preparing, auditing, releasing, PDF-hardening, or rebuttal-hardening academic manuscripts, datasets, artifacts, reviewer packets, or claim registers involving multiple refs, local assets, human labels, agent-assisted drafts, wide tables, figure provenance, submission PDFs, or evidence-boundary checks.
read
Read PDF page by page with structured output — key arguments, terms glossary, thesis connections. Use when reading academic papers, books, or articles.
export
Convert thesis chapters and reading notes from Markdown to Word (.docx) and package for submission. Use when preparing materials for supervisors or examiners.
human-eval-handoff-repair
Use when validating, repairing, or mapping human-evaluation handoff packages, filled annotation CSVs, rebuttal annotation UIs, or reviewer annotation returns across package versions. Applies to checking row alignment, detecting cross-snapshot contamination, converting old labels to current schemas, generating…
proposal-import
Import an existing proposal (usually PDF) into the standard single-file format — extract text and references, strip personal data, mark gaps. Use when the user has a draft from Word, LaTeX, Overleaf or another tool, pastes the text of an older proposal, or wants to carry existing work over and continue it here.
proposal-publish
Build a PDF (or docx fallback) from a proposal file via pandoc — compact layout, typst-first, with install guidance when tools are missing. Also offers a stripped hand-in export, and hands over to a workspace build script where one exists. Use when the user wants a PDF or something to email, print or hand to their…