paper-search-cli

paper-search-cli is a skill for Codex from X-T-E-R/nb-paper-search. It costs 164 tokens per session (1,873 once invoked), scanned A, original, MIT.

A local research tool for discovering academic papers and patents, looking up identifiers, expanding citations, and keeping research-run records. It also supports obtaining and extracting selected research files through configured providers.

In plain words
What is it for?
Finding papers and patents, expanding a paper's citations, resuming research runs, assessing sources transparently, and managing related documents.
Why use it?
It keeps paper searches, citation follow-up, assessments, and research materials in a repeatable workflow.

Skill for Codex

Written for Codex: agents/openai.yaml present.

Good fit Finding papers and patents, expanding a paper's citations, resuming research runs, assessing sources transparently, and managing related documents.

Compare 6 skills from other repositories ↓
Install with agentmods
npx agentmods add skills/x-t-e-r/nb-paper-search/paper-search-cli
Install

Getting it into your agent

One page per mod, every tool's command on it. A separate URL per tool would split the same page into five that compete with each other.

Any agent
npx skills add X-T-E-R/nb-paper-search --skill paper-search-cli
Clone the repo
git clone --depth 1 https://github.com/X-T-E-R/nb-paper-search

Made for: Codex.

Wrote this? Show the measurements

A badge with what this costs and how it scanned, read live from this page, so it follows the numbers instead of freezing them. Markdown for a README, HTML for a documentation site or a project page.

agentmods badge for paper-search-cli

README.md
[![agentmods](https://agentmods.dev/badge/skills/x-t-e-r/nb-paper-search/paper-search-cli/github.svg)](https://agentmods.dev/skills/x-t-e-r/nb-paper-search/paper-search-cli)
Your own site
<a href="https://agentmods.dev/skills/x-t-e-r/nb-paper-search/paper-search-cli"><img src="https://agentmods.dev/badge/skills/x-t-e-r/nb-paper-search/paper-search-cli/github.svg" alt="Measured on agentmods" height="20"></a>

Or the 80×15 button, for a site that already has a row of RSS and ATOM ones. Only the verdict fits; the numbers stay here.

agentmods 80×15 button for paper-search-cli

Your own site · 80×15
<a href="https://agentmods.dev/skills/x-t-e-r/nb-paper-search/paper-search-cli"><img src="https://agentmods.dev/badge/skills/x-t-e-r/nb-paper-search/paper-search-cli.svg" alt="Reviewed on agentmods" width="80" height="20"></a>
Per session 164 Skills are progressive disclosure: only the name and description are preloaded; the body loads when the skill is used.
When invoked 1,873 The whole file, excluding the scripts and references it only reads on demand.
Security scan A 0 findings. A grade says what 26 rules found in the file — not that it is safe.
Origin original No closer match found in the catalogue.
Token cost

What it costs to keep this loaded

Counted locally with the o200k_base tokenizer, which is exact for GPT models; Claude uses its own tokenizer and its counts differ. Treat this as one consistent yardstick across the catalogue rather than a bill. Prices are per million input tokens.

ModelPer sessionOnce invoked
Fable 5.1 $0.00164 $0.01873
Opus 5 $0.00082 $0.00937
Sonnet 5 $0.00033 $0.00375
Haiku 4.5 $0.00016 $0.00187

Measured 9d ago against content hash aa73be987d47, method: parsed. Prices are Anthropic first-party input rates as of 2026-09-10, from the pricing page.

Security

Grade A, and why

paper-search-cli scanned grade A with 0 findings against 26 rules in 11 categories — prompt injection, anti-refusal, data exfiltration, privilege escalation, supply chain, agent snooping, system-prompt leakage, SSRF and excessive agency — measured 9d ago.

The scan reads SKILL.md. This mod also ships 1 executable file (scripts/paper-search.mjs), listed below but not scanned — reading those needs a real analyzer, not pattern matching.

A static scan of the body, not an audit. Every finding is printed with the line that produced it so you can judge whether it matters here. A mod is markdown that instructs an agent; that is exactly why what it instructs is worth reading.

Nothing flagged

None of the 26 patterns this scan looks for appear in this file: no shell pipes, no recursive deletes, no credential paths, no hidden text, no instruction-override or anti-refusal phrasing, no agent-config snooping. That is not a guarantee, it is the absence of the things that are checkable.

skills/paper-search-cli/SKILL.md · 149 lines

How it starts

The opening of the file, as written. The whole thing — 149 lines — stays where its author put it; the contents beside it link to each section on GitHub.

Use this skill for the local paper-search-cli system, its canonical tools, and its MCP server. The display name is NB Paper Search; that is not a breaking rename of the paper-search command, skill slug, configuration keys, canonical tools, or MCP identity.

Installed entrypoint

Run commands from this skill directory through its launcher:

node scripts/paper-search.mjs --version
node scripts/paper-search.mjs paths --json
node scripts/paper-search.mjs status --json
node scripts/paper-search.mjs tools --json

The installed skill is a Junction or symlink into a retained Paper Search checkout. The launcher resolves that checkout and starts its verified runtime. Do not bypass it with repository-relative node dist/cli.js during normal agent use. The paper-search shim is the equivalent human entrypoint.

Activation boundary

Use this skill when the request concerns Paper Search, its provider packages, search/run history, citation expansion, transparent assessment, workspace/material records, its configured or explicit Zotero projection, its MCP server, or a canonical tool. Paper Search may write its own run record to a nearest-directory standalone or Paperflow context. Paperflow still owns project roles and the research runtime; selected bibliography/evidence records remain a separate project workflow.

The optional web_search tool exists only when the user-owned external-search.toml grants External Search v1 process authority. Use normal search/browser routing for general web work. Use a dedicated Zotero skill for general Zotero library operations; use this skill for Paper Search's mapped selected-item projection and explicit zotero sink handoff.

Eight capability groups

Group Use for
discover Academic and patent search, plus optional External Search v1.
identify DOI/PMID/arXiv/ISBN/URL metadata lookup and patent detail.
assess Checksum-bound observation snapshots, conflicts, provenance, and optional explicit policy traces.
acquire Provider-mediated artifact acquisition or recording, including resource_pdf compatibility.
extract Markdown, structured output, and assets through material extractor providers.
organize Local selected workspace add/list/export and Zotero projection.
orchestrate Durable discovery, citation expansion, batch rows, material ingest, and material status.
operate Paths, status, run inspection/pruning plans, config, provider management, help/tools, and MCP serving.

Read the full file on GitHub · 149 lines

Files

What ships with it

5 files beside SKILL.md in the same directory: the scripts, references and assets a skill reads on demand. Not counted in the per-session cost; read them before you install if any of them is executable.

Changes

What this file has done since we first saw it

Hashed on every crawl. A supply-chain change to an agent config is a question of when, not whether, so the history is kept rather than the latest state alone.

  1. 9d ago First seen · 149 lines · 164 tokens per session scan A aa73be987d47

Subscribe to this mod's changes

paper-search-cli is a skill published in the GitHub repository X-T-E-R/nb-paper-search (0 stars, last pushed yesterday), licensed MIT. It adds 164 tokens to every session and 1,873 once invoked, about $0.0008 per session on Opus 5. A static security scan graded it A with 0 findings. No closer match exists in the catalogue, so it is treated as the original; first seen 2026-08-31.

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