Awesome all-in-one research skills for AI agents — covering every academic discipline. Works with Claude Code, Codex, Gemini CLI & Cursor.
xjtulyc/awesome-rosetta-skills
Skill Claude CodeCodex
SciPy numerical toolkit for physics: ODE/PDE solving, FFT analysis, optimization, numerical integration, and sparse linear algebra with real-world examples.
xjtulyc/awesome-rosetta-skills
Skill Claude CodeCodex
SymPy symbolic computation for physics: algebra, calculus, linear algebra, ODE solving, Lagrangian mechanics, quantum physics, and code generation.
xjtulyc/awesome-rosetta-skills
Skill Claude CodeCodex
Labeled multi-dimensional array analysis with xarray: NetCDF/HDF5 I/O, lazy Dask loading, rechunking, Zarr stores, and CF conventions.
xjtulyc/awesome-rosetta-skills
Skill Claude CodeCodex
Atomic Simulation Environment (ASE) for atomistic simulations: structure building, geometry optimization, NEB, molecular dynamics, and trajectory analysis.
xjtulyc/awesome-rosetta-skills
Skill Claude CodeCodex
Use this Skill to query ChEMBL for bioactivity data: target lookup, IC50/Ki retrieval, activity cliffs, SAR tables, and pChEMBL-normalized values.
xjtulyc/awesome-rosetta-skills
Skill Claude CodeCodex
Analyze molecular dynamics trajectories with MDAnalysis — RMSD, RMSF, hydrogen bonds, contact maps, and protein-ligand distances.
xjtulyc/awesome-rosetta-skills
Skill Claude CodeCodex
Process and analyze NMR spectra with nmrglue — FID processing, peak picking, chemical shift referencing, and J-coupling extraction.
xjtulyc/awesome-rosetta-skills
Skill Claude CodeCodex
Use this Skill for chemical file format interconversion (SDF, SMILES, MOL2, PDB), 3D coordinate generation, conformer enumeration, and reaction SMARTS.
xjtulyc/awesome-rosetta-skills
Skill Claude CodeCodex
Use this Skill for materials science with pymatgen: crystal structure manipulation, Materials Project API queries (bandgap, DOS, formation energy), phase diagrams, and symmetry analysis.
xjtulyc/awesome-rosetta-skills
Skill Claude CodeCodex
Use this Skill for quantum chemistry calculations with PySCF: HF/DFT single-point energy, geometry optimization, MP2/CCSD(T) post-HF methods, basis set selection, and molecular orbital analysis.
xjtulyc/awesome-rosetta-skills
Skill Claude CodeCodex
Use this Skill for cheminformatics with RDKit: SMILES/InChI parsing, Morgan fingerprints, Tanimoto similarity, Murcko scaffold decomposition, substructure search, and chemical space visualization.
xjtulyc/awesome-rosetta-skills
Skill Claude CodeCodex
Use this Skill when the user needs to build Bayesian statistical models: prior selection, posterior sampling with MCMC (NUTS), convergence diagnostics, posterior predictive checks, LOO-CV model comparison, hierarchical models, and Bayesian A/B testing. Covers PyMC 5.x and ArviZ.
xjtulyc/awesome-rosetta-skills
Skill Claude CodeCodex
DoWhy and CausalML toolkit for causal DAG construction, effect identification, ATE estimation, propensity score matching, and refutation testing.
xjtulyc/awesome-rosetta-skills
Skill Claude CodeCodex
Use this Skill for graph construction, centrality measures (betweenness, PageRank), community detection (Louvain), and random graph models via networkx.
xjtulyc/awesome-rosetta-skills
Skill Claude CodeCodex
Use this Skill for SVD, PCA, eigendecomposition, Cholesky, iterative solvers, sparse matrix formats, and condition number analysis with numpy and scipy.
xjtulyc/awesome-rosetta-skills
Skill Claude CodeCodex
Use this Skill for operations research and optimization: LP/QP/MILP with cvxpy and OR-Tools, convex relaxation, sensitivity analysis, and Gurobi/GLPK solver interface.
xjtulyc/awesome-rosetta-skills
Skill Claude CodeCodex
Use this Skill for survival analysis: Kaplan-Meier estimator, log-rank test, Cox PH model (Schoenfeld residuals), AFT models, competing risks (Fine-Gray), and time-varying covariates with lifelines.
xjtulyc/awesome-rosetta-skills
Skill Claude CodeCodex
Use this Skill for time series analysis: ARIMA/SARIMA identification (ACF/PACF, AIC), seasonal decomposition (STL), VAR, GARCH volatility, and forecast evaluation.
xjtulyc/awesome-rosetta-skills
Skill Claude CodeCodex
Apply persistent homology, Betti numbers, and mapper graphs to extract topological features from complex datasets.
xjtulyc/awesome-rosetta-skills
Skill Claude CodeCodex
Use this Skill to access OpenAQ air quality data (PM2.5, O3, NO2), compute spatial interpolation, health exposure indices, and city comparisons.
xjtulyc/awesome-rosetta-skills
Skill Claude CodeCodex
Use this Skill for climate trend analysis: Mann-Kendall test, Sen's slope, extreme indices (RX1day, R10mm), percentile thresholds, IPCC-style figures.
xjtulyc/awesome-rosetta-skills
Skill Claude CodeCodex
Download and analyze ERA5 reanalysis climate data via the Copernicus CDS API, compute anomalies, trend analysis, and produce publication-quality climate maps.
xjtulyc/awesome-rosetta-skills
Skill Claude CodeCodex
Query GBIF occurrence data, apply spatial thinning, and build species distribution models using pygbif, geopandas, and elapid.
xjtulyc/awesome-rosetta-skills
Skill Claude CodeCodex
Vector GIS analysis with GeoPandas: spatial joins, overlays, buffer/dissolve, choropleth maps, and rasterio integration for raster-vector workflows.
At most 3 mods per repository are shown here, and a mod shipped inside a plugin is left to that plugin's page — the rest are on their repository pages: