academic-pipeline

academic-pipeline is a skill for Claude Code, Codex from yinqd3/workbuddy-skills. It costs 109 tokens per session (1,031 once invoked), scanned A, original, MIT.

An academic research workflow coordinator that guides work from choosing a research question through writing, review, revisions, and a final submission package.

In plain words
What is it for?
Managing an end-to-end research-to-paper process, including literature research, drafting, peer-review simulation, revisions, integrity checks, and formatting for submission.
Why use it?
It keeps a long paper project organised and adds checks for issues such as invented citations, unsupported data, and methodological mistakes.

Skill for Claude CodeCodex

Written for no agent in particular: nothing here depends on one.

Good fit Managing an end-to-end research-to-paper process, including literature research, drafting, peer-review simulation, revisions, integrity checks, and formatting for submission.

Compare 6 skills from other repositories ↓
Install with agentmods
npx agentmods add skills/yinqd3/workbuddy-skills/academic-pipeline
Install

Getting it into your agent

One page per mod, every tool's command on it. A separate URL per tool would split the same page into five that compete with each other.

Any agent
npx skills add yinqd3/workbuddy-skills --skill academic-pipeline
Clone the repo
git clone --depth 1 https://github.com/yinqd3/workbuddy-skills

Made for: Claude Code, Codex.

Wrote this? Show the measurements

A badge with what this costs and how it scanned, read live from this page, so it follows the numbers instead of freezing them. Markdown for a README, HTML for a documentation site or a project page.

agentmods badge for academic-pipeline

README.md
[![agentmods](https://agentmods.dev/badge/skills/yinqd3/workbuddy-skills/academic-pipeline/github.svg)](https://agentmods.dev/skills/yinqd3/workbuddy-skills/academic-pipeline)
Your own site
<a href="https://agentmods.dev/skills/yinqd3/workbuddy-skills/academic-pipeline"><img src="https://agentmods.dev/badge/skills/yinqd3/workbuddy-skills/academic-pipeline/github.svg" alt="Measured on agentmods" height="20"></a>

Or the 80×15 button, for a site that already has a row of RSS and ATOM ones. Only the verdict fits; the numbers stay here.

agentmods 80×15 button for academic-pipeline

Your own site · 80×15
<a href="https://agentmods.dev/skills/yinqd3/workbuddy-skills/academic-pipeline"><img src="https://agentmods.dev/badge/skills/yinqd3/workbuddy-skills/academic-pipeline.svg" alt="Reviewed on agentmods" width="80" height="20"></a>
Per session 109 Skills are progressive disclosure: only the name and description are preloaded; the body loads when the skill is used.
When invoked 1,031 The whole file, excluding the scripts and references it only reads on demand.
Security scan A 0 findings. A grade says what 26 rules found in the file — not that it is safe.
Origin original No closer match found in the catalogue.
Token cost

What it costs to keep this loaded

Counted locally with the o200k_base tokenizer, which is exact for GPT models; Claude uses its own tokenizer and its counts differ. Treat this as one consistent yardstick across the catalogue rather than a bill. Prices are per million input tokens.

ModelPer sessionOnce invoked
Fable 5.1 $0.00109 $0.01031
Opus 5 $0.00055 $0.00515
Sonnet 5 $0.00022 $0.00206
Haiku 4.5 $0.00011 $0.00103

Measured 11d ago against content hash b90847780c3d, method: parsed. Prices are Anthropic first-party input rates as of 2026-09-11, from the pricing page.

Security

Grade A, and why

academic-pipeline scanned grade A with 0 findings against 26 rules in 11 categories — prompt injection, anti-refusal, data exfiltration, privilege escalation, supply chain, agent snooping, system-prompt leakage, SSRF and excessive agency — measured 11d ago.

A static scan of the body, not an audit. Every finding is printed with the line that produced it so you can judge whether it matters here. A mod is markdown that instructs an agent; that is exactly why what it instructs is worth reading.

Nothing flagged

None of the 26 patterns this scan looks for appear in this file: no shell pipes, no recursive deletes, no credential paths, no hidden text, no instruction-override or anti-refusal phrasing, no agent-config snooping. That is not a guarantee, it is the absence of the things that are checkable.

academic-research/academic-pipeline/SKILL.md · 90 lines

What it actually says

Academic Pipeline — 完整学术研究工作流编排器

轻量级编排器,管理从研究探索到最终稿件的完整学术管线。它不执行实质性工作——只检测阶段、推荐模式、派发技能、管理过渡、跟踪状态。

快速开始

从头开始:

我想写一篇关于生物凝胶固定化强化厌氧消化的研究论文

论文已有,需要修改:

我已有一篇论文,帮我评审和修改

触发条件

用户意图涵盖完整的论文产出流程,而非单一功能需求时触发。

不触发:

  • 只需要查资料/文献综述 → 直接用 deep-research
  • 只需要写论文 → 直接用 academic-paper
  • 只需要审稿 → 直接用 academic-paper-reviewer
  • 只需要检查引文 → 直接用 academic-paper 的 citation-check 模式

10 阶段管线

阶段 名称 调用的技能 可用模式 产出物
1 研究选题 deep-research socratic, full, quick 研究问题简报、方法论蓝本
2 论文写作 academic-paper plan, full 论文初稿
2.5 完整性检查 完整性验证 Agent 完整性报告(引文、数据、统计)
3 同行评审 academic-paper-reviewer full EIC + 3 审稿 + 魔鬼代言报告
3' 作者回应 用户手动 逐条回应每一条评审意见
4 修改 academic-paper revision 修改后稿件
4.5 最终完整性检查 完整性验证 Agent 最终完整性报告
5 再评审 academic-paper-reviewer re-review 修改验证报告
6 最终修改 academic-paper revision 最终稿
输出 材料包 格式化 Agent format-convert 投稿包(论文+图表+回信)

完整性验证协议(阶段 2.5 和 4.5)

7 种 AI 研究失败模式检查:

  1. 实现 Bug — 代码错误导致结果偏差
  2. 幻觉结果 — 不存在的引用、编造的数据
  3. 捷径依赖 — 未经验证的简化假设
  4. Bug 即洞见 — 错误结果被重构成"发现"
  5. 方法论编造 — 声称使用了实际未用的方法
  6. 框架锁定 — 已有框架限制分析视角
  7. 引文幻觉 — 不存在的参考文献

验证内容:

  • 100% 引文核验(每一条参考文献真实存在并可检索)
  • 数据一致性检查
  • 统计报告标准合规检查
  • 声明-证据链完整性

工作流推进规则

  1. 每个阶段完成后,暂停并提示用户确认
  2. 只有用户明确批准后才能进入下一阶段
  3. 用户可随时查看管线状态
  4. 完整性检查未通过 → 不能进入评审

管线状态仪表盘

可随时请求查看:

当前阶段: [阶段号]
已完成: [阶段列表]
下一步: [下阶段名称 + 推荐模式]
质量门禁: [通过/未通过]

Material Passport(可选)

论文的"材料护照"——记录全流程关键产物和决策:

  • 研究问题简报
  • 文献检索策略
  • 评审意见与回应
  • 完整性报告
  • 修改记录
Changes

What this file has done since we first saw it

Hashed on every crawl. A supply-chain change to an agent config is a question of when, not whether, so the history is kept rather than the latest state alone.

  1. 11d ago First seen · 90 lines · 109 tokens per session scan A b90847780c3d

Subscribe to this mod's changes

academic-pipeline is a skill published in the GitHub repository yinqd3/workbuddy-skills (6 stars, last pushed 3mo ago), licensed MIT. It adds 109 tokens to every session and 1,031 once invoked, about $0.0005 per session on Opus 5. A static security scan graded it A with 0 findings. No closer match exists in the catalogue, so it is treated as the original; first seen 2026-08-31.

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