graphify

graphify is a skill for Claude Code, Codex from YousefNabil-SOC/claude-apex. It costs 27 tokens per session (14,140 once invoked), scanned A, a copy of graphify-windows, MIT.

A file-analysis tool that turns a folder into a navigable knowledge graph, an interactive map showing how its files and ideas relate.

In plain words
What is it for?
Use it to create an interactive HTML graph, structured data for GraphRAG systems, and a plain-language report of the folder.
Why use it?
It helps people explore large collections of documents without reading every file in sequence.

Skill for Claude CodeCodex

Written for no agent in particular: nothing here depends on one. Also seen: mentions CLAUDE.md; mentions subagents; mentions Claude Code.

Good fit Use it to create an interactive HTML graph, structured data for GraphRAG systems, and a plain-language report of the folder.

Compare 6 skills from other repositories ↓
Install with agentmods
npx agentmods add skills/yousefnabil-soc/claude-apex/graphify
Install

Getting it into your agent

One page per mod, every tool's command on it. A separate URL per tool would split the same page into five that compete with each other.

Any agent
npx skills add YousefNabil-SOC/claude-apex --skill graphify
Clone the repo
git clone --depth 1 https://github.com/YousefNabil-SOC/claude-apex

Made for: Claude Code, Codex.

Wrote this? Show the measurements

A badge with what this costs and how it scanned, read live from this page, so it follows the numbers instead of freezing them. Markdown for a README, HTML for a documentation site or a project page.

agentmods badge for graphify

README.md
[![agentmods](https://agentmods.dev/badge/skills/yousefnabil-soc/claude-apex/graphify/github.svg)](https://agentmods.dev/skills/yousefnabil-soc/claude-apex/graphify)
Your own site
<a href="https://agentmods.dev/skills/yousefnabil-soc/claude-apex/graphify"><img src="https://agentmods.dev/badge/skills/yousefnabil-soc/claude-apex/graphify/github.svg" alt="Measured on agentmods" height="20"></a>

Or the 80×15 button, for a site that already has a row of RSS and ATOM ones. Only the verdict fits; the numbers stay here.

agentmods 80×15 button for graphify

Your own site · 80×15
<a href="https://agentmods.dev/skills/yousefnabil-soc/claude-apex/graphify"><img src="https://agentmods.dev/badge/skills/yousefnabil-soc/claude-apex/graphify.svg" alt="Reviewed on agentmods" width="80" height="20"></a>
Per session 27 Skills are progressive disclosure: only the name and description are preloaded; the body loads when the skill is used.
When invoked 14,140 The whole file, excluding the scripts and references it only reads on demand.
Security scan A 0 findings. A grade says what 26 rules found in the file — not that it is safe.
Origin 92% copy Near-identical to another mod in the catalogue.
Token cost

What it costs to keep this loaded

Counted locally with the o200k_base tokenizer, which is exact for GPT models; Claude uses its own tokenizer and its counts differ. Treat this as one consistent yardstick across the catalogue rather than a bill. Prices are per million input tokens.

ModelPer sessionOnce invoked
Fable 5.1 $0.00027 $0.14140
Opus 5 $0.00014 $0.07070
Sonnet 5 $0.00005 $0.02828
Haiku 4.5 $0.00003 $0.01414

Measured 7d ago against content hash d371ddb9212a, method: parsed. Prices are Anthropic first-party input rates as of 2026-09-10, from the pricing page.

Security

Grade A, and why

graphify scanned grade A with 0 findings against 26 rules in 11 categories — prompt injection, anti-refusal, data exfiltration, privilege escalation, supply chain, agent snooping, system-prompt leakage, SSRF and excessive agency — measured 7d ago.

A static scan of the body, not an audit. Every finding is printed with the line that produced it so you can judge whether it matters here. A mod is markdown that instructs an agent; that is exactly why what it instructs is worth reading.

Nothing flagged

None of the 26 patterns this scan looks for appear in this file: no shell pipes, no recursive deletes, no credential paths, no hidden text, no instruction-override or anti-refusal phrasing, no agent-config snooping. That is not a guarantee, it is the absence of the things that are checkable.

Origin

This is a copy

92% identical to graphify-windows — 728 lines differ, which has more behind it and is treated as the original. This page carries a canonical link to it rather than competing with it.

skills/graphify/SKILL.md · 1,309 lines

How it starts

The opening of the file, as written. The whole thing — 1,309 lines — stays where its author put it; the contents beside it link to each section on GitHub.

/graphify

Turn any folder of files into a navigable knowledge graph with community detection, an honest audit trail, and three outputs: interactive HTML, GraphRAG-ready JSON, and a plain-language GRAPH_REPORT.md.

Usage

/graphify                                             # full pipeline on current directory → Obsidian vault
/graphify <path>                                      # full pipeline on specific path
/graphify <path> --mode deep                          # thorough extraction, richer INFERRED edges
/graphify <path> --update                             # incremental - re-extract only new/changed files
/graphify <path> --directed                            # build directed graph (preserves edge direction: source→target)
/graphify <path> --whisper-model medium                # use a larger Whisper model for better transcription accuracy
/graphify <path> --cluster-only                       # rerun clustering on existing graph
/graphify <path> --no-viz                             # skip visualization, just report + JSON
/graphify <path> --html                               # (HTML is generated by default - this flag is a no-op)
/graphify <path> --svg                                # also export graph.svg (embeds in Notion, GitHub)
/graphify <path> --graphml                            # export graph.graphml (Gephi, yEd)
/graphify <path> --neo4j                              # generate graphify-out/cypher.txt for Neo4j
/graphify <path> --neo4j-push bolt://localhost:7687   # push directly to Neo4j
/graphify <path> --mcp                                # start MCP stdio server for agent access
/graphify <path> --watch                              # watch folder, auto-rebuild on code changes (no LLM needed)
/graphify <path> --wiki                               # build agent-crawlable wiki (index.md + one article per community)
/graphify <path> --obsidian --obsidian-dir ~/vaults/my-project  # write vault to custom path (e.g. existing vault)
/graphify add <url>                                   # fetch URL, save to ./raw, update graph
/graphify add <url> --author "Name"                   # tag who wrote it
/graphify add <url> --contributor "Name"              # tag who added it to the corpus
/graphify query "<question>"                          # BFS traversal - broad context
/graphify query "<question>" --dfs                    # DFS - trace a specific path
/graphify query "<question>" --budget 1500            # cap answer at N tokens
/graphify path "AuthModule" "Database"                # shortest path between two concepts
/graphify explain "SwinTransformer"                   # plain-language explanation of a node

Read the full file on GitHub · 1,309 lines

Files

What ships with it

1 file beside SKILL.md in the same directory: the scripts, references and assets a skill reads on demand. Not counted in the per-session cost; read them before you install if any of them is executable.

Changes

What this file has done since we first saw it

Hashed on every crawl. A supply-chain change to an agent config is a question of when, not whether, so the history is kept rather than the latest state alone.

  1. 7d ago First seen · 1,309 lines · 27 tokens per session scan A d371ddb9212a

Subscribe to this mod's changes

graphify is a skill published in the GitHub repository YousefNabil-SOC/claude-apex (2 stars, last pushed 3mo ago), licensed MIT. It adds 27 tokens to every session and 14,140 once invoked, about $0.0001 per session on Opus 5. A static security scan graded it A with 0 findings. It is 92% identical to graphify-windows, differing in 728 lines, and is treated as a copy.