projtool-bootstrap

A setup guide for bringing a project under projtool, a project-management tool. It applies only when the user explicitly asks to install, set up, onboard, or retrofit projtool.

In plain words
What is it for?
Use it to check whether projtool is available, inspect the project structure, and prepare its configuration.
Why use it?
It prevents project setup instructions from running during unrelated work.

Skill for Claude CodeCodex

Install

Getting it into your agent

One page per mod, every tool's command on it. A separate URL per tool would split the same page into five that compete with each other.

agentmods
npx agentmods add skills/zhyx12/projtool/projtool-bootstrap
Any agent
npx skills add zhyx12/projtool --skill projtool-bootstrap
Clone the repo
git clone --depth 1 https://github.com/zhyx12/projtool

Made for: Claude Code, Codex.

Per session 168 Skills are progressive disclosure: only the name and description are preloaded; the body loads when the skill is used.
When invoked 1,840 The whole file, excluding the scripts and references it only reads on demand.
Security scan A 0 findings. Scan, not verified.
Origin original No closer match found in the catalogue.
Token cost

What it costs to keep this loaded

Counted locally with the o200k_base tokenizer, which is exact for GPT models; Claude uses its own tokenizer and its counts differ. Treat this as one consistent yardstick across the catalogue rather than a bill. Prices are per million input tokens.

ModelPer sessionOnce invoked
Fable 5 $0.00168 $0.01840
Opus 5 $0.00084 $0.00920
Sonnet 5 $0.00034 $0.00368
Haiku 4.5 $0.00017 $0.00184

Measured 2d ago against content hash 0ba5fd001251, method: parsed. Prices are Anthropic first-party input rates as of 2026-08-30, from the pricing page.

Security

Grade A, and why

projtool-bootstrap scanned grade A with 0 findings against 26 rules in 11 categories — prompt injection, anti-refusal, data exfiltration, privilege escalation, supply chain, agent snooping, system-prompt leakage, SSRF and excessive agency — measured 2d ago.

A static scan of the body, not an audit. Every finding is printed with the line that produced it so you can judge whether it matters here. A mod is markdown that instructs an agent; that is exactly why what it instructs is worth reading.

Nothing flagged

None of the 26 patterns this scan looks for appear in this file: no shell pipes, no recursive deletes, no credential paths, no hidden text, no instruction-override or anti-refusal phrasing, no agent-config snooping. That is not a guarantee, it is the absence of the things that are checkable.

src/projtool/assets/user_skills/projtool-bootstrap/SKILL.md · 141 lines

How it starts

The opening of the file, as written. The whole thing — 141 lines — stays where its author put it; the contents beside it link to each section on GitHub.

projtool-bootstrap

This skill activates the first time a user wants to bring a project under projtool. It is intentionally narrow: the user must mention projtool by name or use a clearly-projtool verb such as retrofit, install, set up, or onboard.

When You Should Not Act

  • The project already has .claude/skills/ml-research-workflow/; that project-level skill owns day-to-day projtool work.
  • The user is asking about agent/client skills in general, not projtool.
  • The user is discussing ML workflow but has not asked to use projtool.

Main Flow

The full flow is in references/retrofit-flow.md. Follow that file, and trust the live MCP tool schema over this document if they ever disagree.

Briefly:

  1. Check MCP availability. mcp__projtool__detect_project_structure should be callable. If not, tell the user to run projtool setup once from a shell and restart the active MCP client in this directory.
  2. Detect. Call mcp__projtool__detect_project_structure and summarize the detected train script, config directory, invocation style, package manager, data path hint, git state, and docs repo status.
  3. Negotiate v4 config. Build a ProposedConfig using the v4 schema: paths.code_dir, main_worktree_name, data_dir, docs_dir, output_dir, remote_workspace, outputs_remote, data_remote, plus paths.docs_repo_url. Do not use removed v3 fields such as docs_repo_path or outputs_local.
  4. Write templates. Call mcp__projtool__retrofit_write_template with the agreed config. Surface conflicts and warnings exactly; do not claim success if conflicts remain.
  5. Tell the user what changed. The raw git repo is converted into a v4 container layout: code/main/ holds the git worktree, while .proj-tool/, .claude/, .codex/, docs/, data/, and output/ live at container root.
  6. Hand off — executably, not rhetorically. The project-level ml-research-workflow skill (just written to .claude/skills/) owns experiments, image builds, training, reports, and sync work from here. retrofit_write_template returns next_action + readiness — follow them:
    • If the user's ORIGINAL request continues into training / reproduction ("接入 projtool 并复现...", "set up projtool and run..."), attempt to load the ml-research-workflow skill NOW and continue the work there in the same session.
    • If this session cannot load a freshly-written project skill, say so explicitly and tell the user to restart the session before any remote work. NEVER continue with raw remote_exec / SSH clone / tmux — that is how projects end up with zero tracked runs (the weavetime failure mode).
    • First reproduction belongs on upstream main: instance_up("main")sync_now("main")run_script(experiment_id="main", ...) (or run_script(experiment_id="exp-<topic>", worktree="main") for a semantic run identity). new_experiment is for branching real research work, not for getting a sync session.

Read the full file on GitHub · 141 lines

Files

What ships with it

1 file beside SKILL.md in the same directory: the scripts, references and assets a skill reads on demand. Not counted in the per-session cost; read them before you install if any of them is executable.

Changes

What this file has done since we first saw it

Hashed on every crawl. A supply-chain change to an agent config is a question of when, not whether, so the history is kept rather than the latest state alone.

  1. 2d ago First seen · 141 lines · 168 tokens per session scan A 0ba5fd001251

Subscribe to this mod's changes

projtool-bootstrap is a skill published in the GitHub repository zhyx12/projtool (1 stars, last pushed 19d ago), licensed MIT. It adds 168 tokens to every session and 1,840 once invoked, about $0.0008 per session on Opus 5. A static security scan graded it A with 0 findings. No closer match exists in the catalogue, so it is treated as the original; first seen 2026-08-31.

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