Skill Claude CodeCodex
Performs quality control on single-cell RNA-seq data (.h5ad or .h5 files) using scverse best practices with MAD-based filtering and comprehensive visualizations. Use when users request QC analysis, filtering low-quality cells, assessing data quality, or following scverse/scanpy best practices for single-cell analysis.
Skill Claude CodeCodex
Provides information about using the skill-to-mcp server and how to install additional skills.
MCP server Claude CodeCodexCursor +2
Allows to retrieve information about an AnnData object via MCP. Runs locally from the anndata-mcp Python package.
Instructions file CodexOpenCode
AGENTS.md instructions for biocontext-ai/protocol-mcp, covering agent instructions, package management, install dependencies, install with test dependencies and run tests.
Instructions file
Claude Code instructions for biocontext-ai/protocol-mcp, a project described as: Wet lab protocol retrieval MCP server, including protocols.io.
MCP server Claude CodeCodexCursor
MCP that connects to wetlab protocol resources, including protocols.io. Runs locally from the protocol-mcp Python package.
biocontext-ai/unofficial-cellosaurus-mcp
MCP server Claude CodeCodexCursor
Unofficial MCP server for the SIB Cellosaurus resource. Runs locally from the cellosaurus_mcp Python package.
biocontext-ai/nucleotide_archive_mcp
Instructions file CodexOpenCode
AGENTS.md instructions for biocontext-ai/nucleotide_archive_mcp, covering developer guide, project overview, architecture, code organization and key concepts.
biocontext-ai/nucleotide_archive_mcp
Instructions file
Claude Code instructions for biocontext-ai/nucleotide_archive_mcp, a project described as: European Nucleotide Archive dataset search MCP server for agentic RNA-sequencing data discovery.
biocontext-ai/nucleotide_archive_mcp
MCP server Claude CodeCodexCursor
MCP server for searching European Nucleotide Archive (ENA) datasets. Find RNA-seq studies, retrieve metadata, and discover related publications to validate research hypotheses. Runs locally from the nucleotide-archive-mcp Python package.