Skill Claude CodeCodex
Quality control metrics and filtering thresholds for protein design. Use this skill when: (1) Evaluating design quality for binding, expression, or structure, (2) Setting filtering thresholds for pLDDT, ipTM, PAE, (3) Checking sequence liabilities (cysteines, deamidation, polybasic clusters), (4) Creating multi-stage…
Skill Claude CodeCodex
Design protein sequences using ProteinMPNN inverse folding. Use this skill when: (1) Designing sequences for generated backbones (e.g. from BindCraft), (2) Redesigning existing protein sequences, (3) Fixing specific residues while designing others, (4) Optimizing sequences for expression or stability, (5) Multi-state…
Skill Claude CodeCodex
Structure prediction using Protenix, ByteDance's open-source PyTorch reproduction of AlphaFold 3. Use this skill when: (1) Predicting protein/DNA/RNA/ligand/ion complex structures, (2) Need AF3-level accuracy with open-source code, (3) MSA-free fast prediction (--no-use-msa), (4) Multi-seed ensemble predictions, (5)…
Skill Claude CodeCodex
First-time setup for protein design tools. Use this skill when: (1) User is new and hasn't run any tools yet, (2) Commands fail with "file not found" or "modal: command not found", (3) Modal authentication errors occur, (4) User asks how to get started or set up the environment, (5) biomodals directory is missing or…
Skill Claude CodeCodex
Solubility-optimized protein sequence design using SolubleMPNN. Use this skill when: (1) Designing for E. coli expression, (2) Optimizing solubility of designed proteins, (3) Reducing aggregation propensity, (4) Need high-yield expression, (5) Avoiding inclusion body formation. For standard design, use proteinmpnn.…
Skill Claude CodeCodex
Access UniProt for protein sequence and annotation retrieval. Use this skill when: (1) Looking up protein sequences by accession, (2) Finding functional annotations, (3) Getting domain boundaries, (4) Finding homologs and variants, (5) Cross-referencing to PDB structures. For structure retrieval, use pdb. For sequence…
Skill Claude CodeCodex
This skill orchestrates a complete structure-based virtual screening (SBVS) pipeline.
BioTender-max/one-person-pharma
Skill Claude CodeCodex
Build a complete AI-powered protein design pipeline with cloud GPU compute (Modal) and automated wet-lab validation (Adaptyv Bio). Enables dry-wet closed-loop iteration for antibody/binder discovery at a fraction of traditional CRO costs ($1.7K for 3 rounds). Use this skill when: (1) Designing a protein/antibody…
At most 3 mods per repository are shown here, and a mod shipped inside a plugin is left to that plugin's page — the rest are on their repository pages: