Skill Claude CodeCodex
Build a source-backed biomedical indication dossier. Use when a research task asks for disease biology, target rationale, patient segmentation, biomarkers, trials, drugs, competitive landscape, or translational evidence.
Skill Claude CodeCodex
Inspect visible research run state, scheduled research follow-ups when available, and durable watch artifacts. Use when the user asks what's running for a research workflow or wants research-run status.
Skill Claude CodeCodex
Design protein sequences around ligand or small-molecule contexts with LigandMPNN-style workflows. Use when a task asks for ligand-aware protein design, residue redesign, constraints, or design ranking.
Skill Claude CodeCodex
Run a literature review using paper search and primary-source synthesis. Use when the user asks for a lit review, paper survey, state of the art, or academic landscape summary on a research topic.
Skill Claude CodeCodex
Register or audit Feynman-managed model endpoints. Use when a research workflow needs a local or remote model service, endpoint health checks, credential refs, startup scripts, or inference routing.
Skill Claude CodeCodex
Find implementable ML training recipes from papers, datasets, docs, and code. Use when the user wants to fine-tune, train, reproduce, or choose a practical ML method, dataset, hyperparameter setup, or benchmark recipe.
Skill Claude CodeCodex
Run explicitly chosen research benchmark or replication jobs on Modal's serverless infrastructure. Use when a Feynman research workflow needs burst remote GPU compute and the Modal CLI is available.
Skill Claude CodeCodex
Run or plan OpenFold3-style structure prediction workflows. Use when a task asks for open protein or complex prediction, setup, model comparison, or reproducibility around OpenFold-family outputs.
Skill Claude CodeCodex
Compare a paper's claims against its public codebase. Use when the user asks to audit a paper, check code-claim consistency, verify reproducibility of a specific paper, or find mismatches between a paper and its implementation.
Skill Claude CodeCodex
Shape the scientific story across a manuscript, abstract, figures, and evidence. Use when a task asks for paper structure, figure order, argument flow, missing analyses, or manuscript revision strategy.
Skill Claude CodeCodex
Turn research findings into a polished paper-style draft with sections, equations, and citations. Use when the user asks to write a paper, draft a report, write up findings, or produce a technical document from collected research.
Skill Claude CodeCodex
Read, extract, and cross-check content across scientific PDFs. Use when a task needs methods, figures, tables, citations, accessions, or claims from multiple places in one or more papers.
Skill Claude CodeCodex
Preview Markdown, LaTeX, PDF, or code artifacts when preview commands are visible, or fall back to shell/browser tools. Use when the user wants to review a written artifact, export a report, or view a rendered document.
Skill Claude CodeCodex
Answer questions about Feynman's own product behavior, runtime, settings, commands, skills, connectors, and package state. Use when a response would claim what Feynman can do or how it is wired.
Skill Claude CodeCodex
Design protein sequences from fixed backbone structures with ProteinMPNN-style workflows. Use when a task asks for backbone-conditioned sequence design, mutation suggestions, fixed residues, or design filtering.
Skill Claude CodeCodex
Dispatch Feynman research notebook or experiment jobs to Modal. Use when a task has explicitly chosen Modal for bounded cloud compute, GPU jobs, or reproducible remote execution.
Skill Claude CodeCodex
Run Feynman research jobs on SSH, Slurm, or lab hosts. Use when a task needs remote host setup, job submission, log harvest, artifact sync, or GPU/cluster execution outside Modal.
Skill Claude CodeCodex
Plan a replication of a paper, claim, or benchmark, and execute only after an explicit environment choice. Use when the user asks to replicate results, reproduce an experiment, verify a claim empirically, or build a replication package.
Skill Claude CodeCodex
Run a tough but constructive internal research critique of an AI research artifact. Use when the user asks for a review, critique, feedback on a paper or draft, or wants to identify weaknesses before submission.
Skill Claude CodeCodex
Provision and manage GPU pods on RunPod for explicitly chosen long-running research experiments. Use when a Feynman replication, benchmark, or dataset-heavy research run needs persistent GPU compute with SSH access.
Skill Claude CodeCodex
Use scGPT-style single-cell foundation model workflows. Use when a task asks for single-cell embeddings, perturbation prediction, cell annotation, batch transfer, or gene-program analysis.
Skill Claude CodeCodex
Run scvi-tools single-cell workflows. Use when a task asks for scVI/scANVI setup, latent embeddings, batch correction, differential expression, cell annotation, or reproducible AnnData analysis.
Skill Claude CodeCodex
Inspect the active Feynman workbench session, artifacts, execution log, settings, and provenance. Use when the task asks what happened in this session, which files were written, what tools ran, or what remains unverified.
Skill Claude CodeCodex
Write a durable session log capturing completed work, findings, open questions, and next steps. Use when the user asks to log progress, save session notes, write up what was done, or create a research diary entry.