openfold3

openfold3 is a skill for Claude Code, Codex from companion-inc/feynman. It costs 41 tokens per session (195 once invoked), scanned A, original, MIT.

A workflow guide for predicting the three-dimensional shape of proteins or protein complexes from biological sequence data. OpenFold is an open-source family of tools for this kind of prediction.

In plain words
What is it for?
Use it to plan or run structure predictions, compare results with other prediction methods or published evidence, and document missing inputs or failed steps.
Why use it?
It helps make prediction work reproducible by checking the required models, databases, computing setup, inputs, and recorded results.

Skill for Claude CodeCodex

Written for no agent in particular: nothing here depends on one.

Good fit Use it to plan or run structure predictions, compare results with other prediction methods or published evidence, and document missing inputs or failed steps.

Compare 6 skills from other repositories ↓
Install with agentmods
npx agentmods add skills/companion-inc/feynman/openfold3
About the project

Feynman is an open-source AI research agent that helps users investigate topics with language models. It supports local model providers and hosted model authentication through its setup process. The catalogue contains skills, agents, and instructions that extend Feynman’s workflows.

companion-inc/feynman · 8,870 stars · on GitHub · feynman.is

Install

Getting it into your agent

One page per mod, every tool's command on it. A separate URL per tool would split the same page into five that compete with each other.

Any agent
npx skills add companion-inc/feynman --skill openfold3
Clone the repo
git clone --depth 1 https://github.com/companion-inc/feynman

Made for: Claude Code, Codex.

Wrote this? Show the measurements

A badge with what this costs and how it scanned, read live from this page, so it follows the numbers instead of freezing them. Markdown for a README, HTML for a documentation site or a project page.

agentmods badge for openfold3

README.md
[![agentmods](https://agentmods.dev/badge/skills/companion-inc/feynman/openfold3/github.svg)](https://agentmods.dev/skills/companion-inc/feynman/openfold3)
Your own site
<a href="https://agentmods.dev/skills/companion-inc/feynman/openfold3"><img src="https://agentmods.dev/badge/skills/companion-inc/feynman/openfold3/github.svg" alt="Measured on agentmods" height="20"></a>

Or the 80×15 button, for a site that already has a row of RSS and ATOM ones. Only the verdict fits; the numbers stay here.

agentmods 80×15 button for openfold3

Your own site · 80×15
<a href="https://agentmods.dev/skills/companion-inc/feynman/openfold3"><img src="https://agentmods.dev/badge/skills/companion-inc/feynman/openfold3.svg" alt="Reviewed on agentmods" width="80" height="20"></a>
Per session 41 Skills are progressive disclosure: only the name and description are preloaded; the body loads when the skill is used.
When invoked 195 The whole file, excluding the scripts and references it only reads on demand.
Security scan A 0 findings. A grade says what 26 rules found in the file — not that it is safe. Third-party audits
  • NVIDIA SkillSpector pass 7 Sept 2026
How audits are shown
Origin original No closer match found in the catalogue.
Token cost

What it costs to keep this loaded

Counted locally with the o200k_base tokenizer, which is exact for GPT models; Claude uses its own tokenizer and its counts differ. Treat this as one consistent yardstick across the catalogue rather than a bill. Prices are per million input tokens.

ModelPer sessionOnce invoked
Fable 5.1 $0.00041 $0.00195
Opus 5 $0.00020 $0.00097
Sonnet 5 $0.00008 $0.00039
Haiku 4.5 $0.00004 $0.00019

Measured 9d ago against content hash ef78fccea35e, method: parsed. Prices are Anthropic first-party input rates as of 2026-09-08, from the pricing page.

Security

Grade A, and why

openfold3 scanned grade A with 0 findings against 26 rules in 11 categories — prompt injection, anti-refusal, data exfiltration, privilege escalation, supply chain, agent snooping, system-prompt leakage, SSRF and excessive agency — measured 9d ago.

A static scan of the body, not an audit. Every finding is printed with the line that produced it so you can judge whether it matters here. A mod is markdown that instructs an agent; that is exactly why what it instructs is worth reading.

Nothing flagged

None of the 26 patterns this scan looks for appear in this file: no shell pipes, no recursive deletes, no credential paths, no hidden text, no instruction-override or anti-refusal phrasing, no agent-config snooping. That is not a guarantee, it is the absence of the things that are checkable.

skills/openfold3/SKILL.md · 19 lines

What it actually says

OpenFold3

Use this skill for OpenFold-family structure prediction or comparison.

Workflow:

  1. Normalize FASTA, chains, templates, MSAs, ligands or partners, seeds, and expected output format.
  2. Verify model code, checkpoints, databases, and GPU route before running.
  3. Save the input manifest, environment lockfile, command, logs, structure outputs, confidence files, and runtime metadata.
  4. Compare against AlphaFold-style, ESMFold-style, PDB, or literature evidence when the result affects a decision.
  5. Report reproducibility gaps such as missing databases, unavailable weights, failed templates, or route-specific approximations.

Do not present an OpenFold-family output without version and input provenance.

Changes

What this file has done since we first saw it

Hashed on every crawl. A supply-chain change to an agent config is a question of when, not whether, so the history is kept rather than the latest state alone.

  1. 9d ago First seen · 19 lines · 41 tokens per session scan A ef78fccea35e

Subscribe to this mod's changes

openfold3 is a skill published in the GitHub repository companion-inc/feynman (8,870 stars, last pushed 13d ago), licensed MIT. It adds 41 tokens to every session and 195 once invoked, about $0.0002 per session on Opus 5. A static security scan graded it A with 0 findings. No closer match exists in the catalogue, so it is treated as the original; first seen 2026-08-30.

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