Instructions file
Claude Code instructions for ctoth/claudio, covering claude.md, project overview, build and development commands, powershell (windows) and build the main binary.
113 25d ago B 3,690 tokens
Plugin Claude Code
Plugin marketplace listing 1 plugin: research-papers.
31 7d ago A
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Instructions file
Claude Code instructions for ctoth/research-papers-plugin, covering research-papers-plugin, skill execution and release process.
31 7d ago A 253 tokens
Plugin Claude Code
Annotated research paper collection management — retrieve, read, extract, cross-reference scientific papers.
31 7d ago A
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adjudicate
05Skill Claude CodeCodex
Systematically adjudicate disagreements across a paper collection. Produces ruthless verdicts on who was wrong, what supersedes what, and what the best current understanding is. Organized by topic clusters with actionable replacement values for implementation.
31 7d ago A 48 tokens
Skill Claude CodeCodex
Create a propstore context for one paper with CEL assumptions, parameters, and perspective. Every claim extracted from the paper will reference this context. Required before extract-claims if the paper does not already have one.
31 7d ago A 45 tokens
Skill Claude CodeCodex
Author DeLP/McCarthy context lifting rules between existing context YAMLs so cross-context claim reasoning can proceed. Collection-level, runs after all papers are ingested. Targets the CONTEXTPHINODE records that accumulate when multiple per-paper contexts share concepts with no authored bridges.
31 7d ago A 61 tokens
author-rules
08Skill Claude CodeCodex
Author the DeLP rule artifacts (strict, defeasible, properdefeater, blockingdefeater) encoding a paper's stated argument structure. Runs after register-predicates.
31 7d ago A 41 tokens
Skill Claude CodeCodex
Enrich existing source-branch claims by updating them through pks source propose-claim.
31 7d ago A 23 tokens
Skill Claude CodeCodex
Extract propositional claims from a paper directory into the propstore source branch using pks source propose-claim.
31 7d ago A 26 tokens
Skill Claude CodeCodex
Extract intra-paper justification structure and author it through pks source propose-justification.
31 7d ago A 22 tokens
Skill Claude CodeCodex
Extract inter-claim stances and author them through pks source propose-stance.
31 7d ago A 21 tokens
Skill Claude CodeCodex
Rebuild a knowledge store from a paper collection by running paper-process per paper, then doing one final build and optional stance backfill.
31 7d ago A 32 tokens
Skill Claude CodeCodex
Process all unprocessed PDFs in papers/ through the full paper-process workflow.
31 7d ago A 21 tokens
lint-paper
15Skill Claude CodeCodex
Check paper directories for completeness, format compliance, and index consistency. Run on a single paper or --all for the entire collection.
31 7d ago A 29 tokens
Skill Claude CodeCodex
Retrieve a paper, read it, and run the full per-paper propstore ingestion flow through nested skills. Give it a URL, DOI, or title.
31 7d ago A 34 tokens
paper-reader
17Skill Claude CodeCodex
Read scientific papers and extract implementation-focused notes. Converts PDFs to page images, then reads them. Papers at most 300pp are read directly by the assigned worker; papers greater than 300pp use a chapter-aligned chunk protocol (preferred) or 50-page chunks (fallback) and synthesize a master notes.md that…
31 7d ago C 83 tokens
Skill Claude CodeCodex
Credentialed-source backend for retrieving books from Bookshare (bookshare.org) into the papers/ collection. Given a book title or ISBN and a target directory name, it searches Bookshare and downloads the EPUB via the published bookshare CLI. Download-only (produces book.epub). Enable only if you have a Bookshare…
31 7d ago A 89 tokens
Skill Claude CodeCodex
Paywalled-access backend for paper-retriever. Retrieves a paywalled paper's PDF through an institutional / library subscription (a library proxy such as EZproxy or OpenAthens, or an institutional login), given an identifier (DOI/URL) and the target paper directory name. Invoked by paper-retriever when open-access…
31 7d ago A 92 tokens
Skill Claude CodeCodex
Paywalled-access backend for paper-retriever. Retrieves a paywalled paper's PDF via sci-hub browser automation, given an identifier (DOI/URL) and the target paper directory name. Invoked by paper-retriever when open-access channels fail; enabled by default. Disable this skill to remove sci-hub from the retrieval…
31 7d ago A 80 tokens
Skill Claude CodeCodex
Retrieve a scientific paper PDF given an arxiv URL, DOI, or paper title. Downloads to papers/ directory. Handles open-access retrieval (arxiv direct, Chrome print-to-pdf for publisher-direct HTML, Unpaywall, title-based open-repository search); for paywalled papers it hands off to whichever paper-retriever- access…
31 7d ago A 88 tokens
Skill Claude CodeCodex
Extract all "New Leads" from the paper collection and process them via paper-process. Retrieves and reads papers that other papers in your collection cite but you don't have yet. Use --all to process everything, or pass a number to limit (e.g., "10" for first 10). Add --parallel N to process N leads concurrently via…
31 7d ago A 80 tokens
Skill Claude CodeCodex
Process all unprocessed PDF files in the papers/ root directory. If subagents are available, parallelize across papers immediately after listing them; otherwise process sequentially. Any PDF in papers/ root is unprocessed by convention (processed papers live in subdirectories). Invokes paper-reader on each PDF.
31 7d ago A 65 tokens
Skill Claude CodeCodex
Reconcile source-branch concept vocabularies across a paper collection and report collision groups.
31 7d ago A 23 tokens