dna-seq

dna-seq/just-dna-lite

Settings file Claude Code

lite and fast version of just-dna-seq personalized genomic platform.

dna-seq/just-dna-lite

Skill Claude CodeCodex

Author, resolve, compile and publish a just-dna annotation module — the spec directory layout, the CSV column contracts and vocabularies, the enrich→compile pipeline, and the checks that decide whether a module will publish. Use when creating a new annotation module, editing an existing spec (variants.csv…

dna-seq/just-dna-lite

Cursor rule Cursor

use eliot as default logging library, use with startaction as action pattern for logging. Avoid addfailurefields, it does not exist. Avoid writing overly defensive code with many try and catch blocks.

dna-seq/just-dna-lite

Cursor rule Cursor

Always use typehints, do not use relative pathes, always use pathlib for files and typer for CLI. By default use uv as package manager and run through uv run. When you run some code in bash do not generate print out with "!".

dna-seq/just-dna-lite

Cursor rule Cursor

the project is uv-based, please use uv to run stuff!

dna-seq/just-dna-lite

Instructions file CodexOpenCode

AGENTS.md instructions for dna-seq/just-dna-lite, covering agent guidelines, repository layout (uv workspace), running the app, uv script entry point collisions and coding standards.

dna-seq/just-dna-lite

Instructions file

Claude Code instructions for dna-seq/just-dna-lite, covering agent guidelines, repository layout (uv workspace), running the app, uv script entry point collisions and dependency pins — where every version constraint lives.

dna-seq/just-prs-mcp

Skill Claude CodeCodex

Produce an interpretable polygenic-risk read for one trait from one or more personal genome VCFs using the just-prs MCP server. Use when a user asks to "compute PRS for ", "what's my genetic risk for ", "compare Anton and Livia on ", or to turn a by-trait score panel into a trustworthy shortlist. Thin wrapper over…

dna-seq/just-prs-mcp

Plugin Claude Code

Search the PGS Catalog, compute polygenic risk scores, and produce evidence-aware trait interpretations.

dna-seq/just-prs-mcp

Settings file Claude Code

Agent settings declaring 1 allowed tools.

dna-seq/just-prs-mcp

MCP server Claude CodeCodexCursor

An MCP server wrapping just-prs — PGS Catalog search and polygenic risk score computation. Runs locally from the just-prs-mcp Python package. Needs 1 environment variable to run.

dna-seq/just-prs-mcp

Instructions file CodexOpenCode

AGENTS.md instructions for dna-seq/just-prs-mcp, covering agents.md, what this is, pre-configured test genomes, quick play for agents and commands (prefer these).

dna-seq/just-prs-mcp

Instructions file

Claude Code instructions for dna-seq/just-prs-mcp: See AGENTS.md for build/test/run commands, architecture, and conventions. This file exists so Claude Code picks up the same guidance.