donbr

42 mods across 2 repositories, 7 stars between them.

scaffold-fastmcp

06

donbr/lifesciences-research

Command Claude Code

Scaffold a new FastMCP server with standard Life Sciences project structure following ADR-001 patterns.

7 6mo ago A 19 tokens original MIT

speckit.analyze

07

donbr/lifesciences-research

Command Claude Code

Perform a non-destructive cross-artifact consistency and quality analysis across spec.md, plan.md, and tasks.md after task generation.

7 6mo ago A 26 tokens copy · 100% MIT

speckit.clarify

09

donbr/lifesciences-research

Command Claude Code

Identify underspecified areas in the current feature spec by asking up to 5 highly targeted clarification questions and encoding answers back into the spec.

7 6mo ago A 27 tokens copy · 100% MIT

donbr/lifesciences-research

Command Claude Code

Create or update the project constitution from interactive or provided principle inputs, ensuring all dependent templates stay in sync.

7 6mo ago A 21 tokens copy · 100% MIT

speckit.plan

12

donbr/lifesciences-research

Command Claude Code

Execute the implementation planning workflow using the plan template to generate design artifacts.

7 6mo ago A 14 tokens copy · 98% MIT

speckit.tasks

14

donbr/lifesciences-research

Command Claude Code

Generate an actionable, dependency-ordered tasks.md for the feature based on available design artifacts.

7 6mo ago A 18 tokens copy · 100% MIT

donbr/lifesciences-research

Command Claude Code

Convert existing tasks into actionable, dependency-ordered GitHub issues for the feature based on available design artifacts.

7 6mo ago A 21 tokens copy · 100% MIT

donbr/lifesciences-research

Skill Claude CodeCodex

Queries clinical databases (Open Targets, ClinicalTrials.gov) via curl for target-disease associations, target tractability assessment, and clinical trial discovery. This skill should be used when the user asks to "validate drug targets", "find clinical trials", "assess target tractability", "discover disease…

7 6mo ago A 94 tokens original MIT

lifesciences-crispr

18

donbr/lifesciences-research

Skill Claude CodeCodex

Validates synthetic lethality claims from CRISPR knockout screens using BioGRID ORCS 5-phase workflow. This skill should be used when the user asks to "validate synthetic lethality", "query CRISPR essentiality data", "find gene dependencies", "compare cell line screens", or mentions BioGRID ORCS, gene knockout data…

7 6mo ago A 102 tokens original MIT

donbr/lifesciences-research

Skill Claude CodeCodex

Queries genomic databases (Ensembl, NCBI, HGNC) via curl for gene lookup, variant annotation, orthology, and cross-database ID resolution. This skill should be used when the user asks to "annotate variants", "find orthologs", "map gene IDs", "analyze linkage disequilibrium", or mentions gene symbols, ENSG IDs, HGNC…

7 6mo ago A 101 tokens original MIT

donbr/lifesciences-research

Skill Claude CodeCodex

Orchestrates life sciences APIs to build knowledge graphs using the Fuzzy-to-Fact protocol, combining MCPs for nodes and curl for edges, then persisting to Graphiti. This skill should be used when the user asks to "build knowledge graphs", "find biological connections", "explore drug repurposing", "validate drug…

7 6mo ago A 104 tokens original MIT

donbr/lifesciences-research

Skill Claude CodeCodex

Queries pharmacology databases (ChEMBL, PubChem, DrugBank, IUPHAR) via curl for drug mechanisms, target identification, bioactivity profiling, and indication discovery. This skill should be used when the user asks to "find drug mechanisms", "identify drug targets", "analyze bioactivity data", "discover drug…

7 6mo ago A 101 tokens original MIT

donbr/lifesciences-research

Skill Claude CodeCodex

Queries protein databases (UniProt, STRING, BioGRID) via curl for protein lookups, protein-protein interactions, functional enrichment analysis, and cross-database ID mapping. This skill should be used when the user asks to "find protein interactions", "analyze interaction networks", "perform GO enrichment", "map…

7 6mo ago A 98 tokens original MIT

graphiti-aura

23

donbr/lifesciences-research

MCP server Claude CodeCodexCursor +2

MCP server "graphiti-aura" as configured in donbr/lifesciences-research. Launched with /home/donbr/graphiti-fastmcp/scripts/run_mcp_server.sh.

7 6mo ago A tokens not measured original MIT

donbr/lifesciences-research

MCP server Claude CodeCodexCursor +2

MCP server "neo4j-aura-management", hosted remotely at localhost, as configured in donbr/lifesciences-research.

7 6mo ago A tokens not measured original MIT