Command Claude Code
Generate production graph statistics for Neo4j Aura analytics and capacity planning.
Command Claude Code
Generate production graph statistics for Neo4j Aura analytics and capacity planning.
Command Claude Code
Generate development environment statistics for Docker Neo4j namespace management.
Command Claude Code
Display unified real-time health status for Neo4j Aura and Graphiti services.
Command Claude Code
Run Day 1 verification sequence to confirm environment is working.
Command Claude Code
Scaffold a new FastMCP server with standard Life Sciences project structure following ADR-001 patterns.
Command Claude Code
Scaffold a new FastMCP server with standard Life Sciences project structure following ADR-001 patterns.
Command Claude Code
Perform a non-destructive cross-artifact consistency and quality analysis across spec.md, plan.md, and tasks.md after task generation.
Command Claude Code
Generate a custom checklist for the current feature based on user requirements.
Command Claude Code
Identify underspecified areas in the current feature spec by asking up to 5 highly targeted clarification questions and encoding answers back into the spec.
Command Claude Code
Create or update the project constitution from interactive or provided principle inputs, ensuring all dependent templates stay in sync.
Command Claude Code
Execute the implementation plan by processing and executing all tasks defined in tasks.md.
Command Claude Code
Execute the implementation planning workflow using the plan template to generate design artifacts.
Command Claude Code
Create or update the feature specification from a natural language feature description.
Command Claude Code
Generate an actionable, dependency-ordered tasks.md for the feature based on available design artifacts.
Command Claude Code
Convert existing tasks into actionable, dependency-ordered GitHub issues for the feature based on available design artifacts.
Settings file Claude Code
Agent settings configuring enabledPlugins.
Skill Claude CodeCodex
Queries clinical databases (Open Targets, ClinicalTrials.gov) via curl for target-disease associations, target tractability assessment, and clinical trial discovery. This skill should be used when the user asks to "validate drug targets", "find clinical trials", "assess target tractability", "discover disease…
Skill Claude CodeCodex
Validates synthetic lethality claims from CRISPR knockout screens using BioGRID ORCS 5-phase workflow. This skill should be used when the user asks to "validate synthetic lethality", "query CRISPR essentiality data", "find gene dependencies", "compare cell line screens", or mentions BioGRID ORCS, gene knockout data…
Skill Claude CodeCodex
Queries genomic databases (Ensembl, NCBI, HGNC) via curl for gene lookup, variant annotation, orthology, and cross-database ID resolution. This skill should be used when the user asks to "annotate variants", "find orthologs", "map gene IDs", "analyze linkage disequilibrium", or mentions gene symbols, ENSG IDs, HGNC…
Skill Claude CodeCodex
Orchestrates life sciences APIs to build knowledge graphs using the Fuzzy-to-Fact protocol, combining MCPs for nodes and curl for edges, then persisting to Graphiti. This skill should be used when the user asks to "build knowledge graphs", "find biological connections", "explore drug repurposing", "validate drug…
Skill Claude CodeCodex
Queries pharmacology databases (ChEMBL, PubChem, DrugBank, IUPHAR) via curl for drug mechanisms, target identification, bioactivity profiling, and indication discovery. This skill should be used when the user asks to "find drug mechanisms", "identify drug targets", "analyze bioactivity data", "discover drug…
Skill Claude CodeCodex
Queries protein databases (UniProt, STRING, BioGRID) via curl for protein lookups, protein-protein interactions, functional enrichment analysis, and cross-database ID mapping. This skill should be used when the user asks to "find protein interactions", "analyze interaction networks", "perform GO enrichment", "map…
MCP server Claude CodeCodexCursor +2
MCP server "graphiti-aura" as configured in donbr/lifesciences-research. Launched with /home/donbr/graphiti-fastmcp/scripts/run_mcp_server.sh.
MCP server Claude CodeCodexCursor +2
MCP server "neo4j-aura-management", hosted remotely at localhost, as configured in donbr/lifesciences-research.