genecell

11 mods across 4 repositories, 20 stars between them.

stato

01

genecell/stato

Skill Claude CodeCodex

Use stato to persist, validate, and restore an AI agent's cognitive state (memory, plan, context, skills) as typed Python modules in a .stato/ directory. Load this when working in a project with a .stato/ folder: to restore prior context (stato resume), capture what you learn (crystallize / edit modules), validate…

9 1mo ago A 110 tokens original MIT

preprint-fulltext

03

genecell/preprint-fulltext

Plugin Claude Code

Retrieve full text of bioRxiv/medRxiv/arXiv preprints as structured sections to ground scientific reasoning and deep research, search/discover preprints, and build embedding-ready corpora (Europe PMC + openRxiv S3 + arXiv LaTeXML), via CLI and MCP.

2 1mo ago A tokens not measured

preprint-fulltext

04

genecell/preprint-fulltext

Cursor rule Cursor

Retrieve full text of bioRxiv/medRxiv/arXiv preprints as structured sections to ground scientific reasoning and deep research (methods/results, not just abstracts), or build embedding-ready corpora. Use when a task needs a preprint's full text or sections from a DOI/arXiv id/URL; to verify a claim against a paper's…

2 1mo ago A 1,654 tokens

genecell/preprint-fulltext

Instructions file CodexOpenCode

AGENTS.md instructions for genecell/preprint-fulltext, covering preprint-fulltext, when to use, why full text (for grounded reasoning), cli and python.

2 1mo ago A 1,481 tokens

preprint-fulltext

07

genecell/preprint-fulltext

Skill Claude CodeCodex

Retrieve full text of bioRxiv/medRxiv/arXiv preprints as structured sections to ground scientific reasoning and deep research (methods/results, not just abstracts), or build embedding-ready corpora. Use when a task needs a preprint's full text or sections from a DOI/arXiv id/URL; to verify a claim against a paper's…

2 1mo ago A 190 tokens

preprint-fulltext

08

genecell/preprint-fulltext

MCP server Claude CodeCodexCursor +2

CLI + MCP toolkit that retrieves full text of bioRxiv/medRxiv/arXiv preprints as structured sections — grounding LLM/agent scientific reasoning and deep research — and builds embedding-ready corpora. Runs locally from the preprint-fulltext Python package. Needs 2 environment variables to run.

2 1mo ago A tokens not measured

piaso

10

genecell/PIASO-for-agents

Plugin Claude Code

PIASO single-cell omics ecosystem for coding agents: marker gene identification (COSG/COSGR), gene-set enrichment scoring, cell-type annotation, single-cell (SCALAR) and spatial (LARIS) ligand-receptor analysis, and cross-condition differential expression (Emergene).

1 1mo ago A tokens not measured

piaso-mcp

11

genecell/PIASO-for-agents

MCP server Claude CodeCodexCursor

Local stdio MCP server for the PIASO single-cell omics ecosystem — serves knowledge and public data (PIASOmarkerDB via the live piaso.org API), never compute or user data. Runs locally from the piaso-mcp Python package.

1 1mo ago A tokens not measured