InstituteforDiseaseModeling

InstituteforDiseaseModeling/idm_standards

Plugin Claude Code

Plugin marketplace listing 1 plugin: idm-standards.

InstituteforDiseaseModeling/idm_standards

Skill Claude CodeCodex

Use when docsguidance/ has changed and the idm-standards plugin's documentation skills need to be synced with those changes. Triggers on requests like "update the docs skills", "sync the plugin with docsguidance", "propagate the docsguidance changes", "bump the plugin version", or "update the changelog for the docs…

InstituteforDiseaseModeling/idm_standards

Plugin Claude Code

Audit and improve scientific research code and documentation against IDM engineering and documentation standards: code quality scoring, automated fixes, exhaustive per-file review, and docs audits.

InstituteforDiseaseModeling/idm_standards

Agent

Reviews a single source file against a fixed checklist and returns a structured markdown findings block. Dispatched in parallel by the audit-code-exhaustive skill, one invocation per file. Read-only — never modifies code. Examples: Context: audit-code-exhaustive skill is running and dispatching reviewers in a wave…

InstituteforDiseaseModeling/idm_standards

Agent

Reviews an entire repository at the project level (README, tests, CI, licenses, secrets, releases, etc.) against a fixed checklist and returns a structured markdown findings block. Dispatched in parallel by the audit-code-exhaustive skill, once per run, alongside the per-file reviewers. Read-only — never modifies…

InstituteforDiseaseModeling/idm_standards

Agent

Scores the quality metrics (correct, clear, concise) of a software project against IDM engineering quality guidelines. Dispatched by the audit-code and audit-r-code skills. Use this agent when asked to evaluate correctness, code clarity, or code conciseness of a project. Examples: Context: audit-code skill is running…

InstituteforDiseaseModeling/idm_standards

Agent

Scores the safety metrics (compliant, reproducible) of a software project against IDM engineering quality guidelines. Dispatched by the audit-code and audit-r-code skills. Use this agent when asked to check for license compliance, exposed secrets, dependency management, or reproducibility of a project. Examples…

InstituteforDiseaseModeling/idm_standards

Agent

Scores the usability metrics (simple, powerful, performant, documented, accessible) of a software project against IDM engineering quality guidelines. Dispatched by the audit-code and audit-r-code skills. Use this agent when asked to evaluate API design, documentation quality, performance, or accessibility of a…

InstituteforDiseaseModeling/idm_standards

Skill Claude CodeCodex

Exhaustive fan-out per-file code review for an entire project. Dispatches the idm-code-reviewer agent in parallel waves over a set of files, runs idm-repo-reviewer in parallel for project-level concerns, and aggregates the findings into codeauditexhaustive.md with a summary at the top. Use when the user asks to…

InstituteforDiseaseModeling/idm_standards

Skill Claude CodeCodex

The Audit-Code skill scores a software project against IDM engineering quality tiers (1–3) across quality, usability, and safety metrics, and writes a codeaudit.md report. Use this skill when the user asks to "audit my code", "score my project", "check engineering quality", "evaluate code quality", "assess tier…

InstituteforDiseaseModeling/idm_standards

Skill Claude CodeCodex

Centralizes IDM's documentation topic-type guidance (borrowed from Diátaxis) so Claude can write, review, or improve documentation following the four distinct topic types (tutorials, how-tos, reference, explanation). Also includes guidance on how to organize those topics within the table of contents (TOC), including…

InstituteforDiseaseModeling/idm_standards

Skill Claude CodeCodex

Comprehensive documentation audit for IDM projects. Checks docs completeness against IDM standards (README, tutorials, API reference, changelog, etc.), then applies the audit-docs-structure, audit-personas, and audit-docstrings skills to evaluate structure, audience fit, and docstring quality. Produces a unified…

InstituteforDiseaseModeling/idm_standards

Skill Claude CodeCodex

Guidelines for writing Python docstrings in this project. Always use when writing, updating, editing, or reviewing docstrings for components, functions, or classes. Covers Google-style format, MkDocs cross-references, usage examples, and researcher workflow context.

InstituteforDiseaseModeling/idm_standards

Skill Claude CodeCodex

Checks that project documentation is written appropriately for its target IDM personas (policy-maker, policy-influencer, model-user, model-extender, model-builder). Use when reviewing, auditing, or writing documentation for any IDM modeling project. Also use when the user mentions personas, audience appropriateness…

InstituteforDiseaseModeling/idm_standards

Skill Claude CodeCodex

The Audit-Project skill runs IDM code and/or documentation audits on a project with a single set of questions, and summarizes the results in projectaudit.md. Use this skill when the user asks to "audit my project", "audit everything", "check code and docs", "run a full audit", or invokes /idm-standards:audit-project.…

InstituteforDiseaseModeling/idm_standards

Skill Claude CodeCodex

The Audit-R-Code skill scores an R project against IDM engineering quality tiers (1–3) across quality, usability, and safety metrics, and writes a codeaudit.md report. Use this skill when the project being audited is written in R (DESCRIPTION file, renv.lock, or mostly .R files) — including when the user asks to…

InstituteforDiseaseModeling/idm_standards

Skill Claude CodeCodex

The Fix-Code skill reads recommendations from a codeaudit.md report and implements prioritized improvements to the project. Use this skill when the user asks to "fix my project", "implement the recommendations", "improve my project score", "apply engineering fixes", or invokes /idm-standards:fix-code. Also use when…

InstituteforDiseaseModeling/idm_standards

Skill Claude CodeCodex

The Fix-Project skill reads whichever IDM audit reports exist in a project (codeaudit.md, docsaudit.md, codeauditexhaustive.md) and implements prioritized fixes across code and documentation. Use this skill when the user asks to "fix my project", "apply the audit recommendations", "fix the code and docs", says "now…