ma-compbio-lab

ma-compbio-lab/SkillFoundry

Skill Claude CodeCodex

Use this starter when a task lands in the Quantum chemistry setup frontier leaf and the repository has curated resources but no dedicated runtime implementation yet.

ma-compbio-lab/SkillFoundry

Skill Claude CodeCodex

Use this skill to generate a small deterministic conformer ensemble with RDKit ETKDG and summarize the lowest-energy structures.

ma-compbio-lab/SkillFoundry

Skill Claude CodeCodex

Use this starter when a task lands in the Trajectory analysis frontier leaf and the repository has curated resources but no dedicated runtime implementation yet.

ma-compbio-lab/SkillFoundry

Skill Claude CodeCodex

Use this skill to search EBI BioSamples for public sample metadata by text query or lightweight filters and return compact summaries.

ma-compbio-lab/SkillFoundry

Skill Claude CodeCodex

Use this skill to validate a small CSV or TSV table against a simple Frictionless schema and emit a compact machine-readable error summary.

ma-compbio-lab/SkillFoundry

Skill Claude CodeCodex

Use this skill to harmonize small metadata tables with inconsistent column names and categorical labels into one canonical TSV plus a compact JSON summary.

ma-compbio-lab/SkillFoundry

Skill Claude CodeCodex

Use this skill to round-trip a small integer matrix through a deterministic numcodecs compressor and inspect the encoded payload summary.

ma-compbio-lab/SkillFoundry

Skill Claude CodeCodex

Use this skill to convert a small tabular file into Parquet with PyArrow and inspect a deterministic round-trip summary.

ma-compbio-lab/SkillFoundry

Skill Claude CodeCodex

Use this skill to package a small local data file into an RO-Crate directory with basic provenance-rich metadata and a compact summary of the generated graph.

ma-compbio-lab/SkillFoundry

Skill Claude CodeCodex

Use this skill to generate a deterministic tiny dataset bundle for tests, demos, and smoke fixtures.

ma-compbio-lab/SkillFoundry

Skill Claude CodeCodex

Use this skill to convert a small numeric matrix into a chunked, compressed Zarr store and inspect a deterministic summary of its layout.

ma-compbio-lab/SkillFoundry

Skill Claude CodeCodex

Use this starter when a task lands in the ADMET modeling frontier leaf and the repository has curated resources but no dedicated runtime implementation yet.

ma-compbio-lab/SkillFoundry

Skill Claude CodeCodex

Use this starter when a task lands in the Benchmarks and evaluation frontier leaf and the repository has curated resources but no dedicated runtime implementation yet.

ma-compbio-lab/SkillFoundry

Skill Claude CodeCodex

Use this skill to search ChEMBL molecules by keyword and return a compact compound summary. Do not use it for local chemistry calculations or unsupported bulk export.

ma-compbio-lab/SkillFoundry

Skill Claude CodeCodex

Use this skill to compute compact DeepChem circular fingerprints from a small set of SMILES strings with the repo-managed DeepChem prefix. Do not use it for model training, docking, or large library screening.

ma-compbio-lab/SkillFoundry

Skill Claude CodeCodex

Use this starter when a task lands in the Molecular generation frontier leaf and the repository has curated resources but no dedicated runtime implementation yet.

ma-compbio-lab/SkillFoundry

Skill Claude CodeCodex

Use this starter when a task lands in the QSAR / property prediction frontier leaf and the repository has curated resources but no dedicated runtime implementation yet.

ma-compbio-lab/SkillFoundry

Skill Claude CodeCodex

Use this skill to compute compact cheminformatics descriptors from one SMILES string with RDKit. Do not use it for docking, quantum chemistry, or large library screening.

ma-compbio-lab/SkillFoundry

Skill Claude CodeCodex

Use this skill to standardize one small-molecule SMILES string with RDKit MolStandardize. It is for local cleanup, salt stripping, uncharging, and tautomer canonicalization, not docking or batch-library processing.

ma-compbio-lab/SkillFoundry

Skill Claude CodeCodex

Use this skill to compute Murcko scaffold summaries for a small local molecule set with RDKit. Prefer it for deterministic scaffold grouping and smoke-scale cheminformatics checks.

ma-compbio-lab/SkillFoundry

Skill Claude CodeCodex

Use this starter when a task lands in the Virtual screening frontier leaf and the repository has curated resources but no dedicated runtime implementation yet.

ma-compbio-lab/SkillFoundry

Skill Claude CodeCodex

Use this starter when a task lands in the Climate reanalysis access frontier leaf and the repository has curated resources but no dedicated runtime implementation yet.

ma-compbio-lab/SkillFoundry

Skill Claude CodeCodex

Use this skill to run a deterministic point-in-polygon join with GeoPandas and summarize the result in compact JSON.

ma-compbio-lab/SkillFoundry

Skill Claude CodeCodex

Use this starter when a task lands in the Physics-informed forecasting frontier leaf and the repository has curated resources but no dedicated runtime implementation yet.