mronkko

mronkko/claude-academic-research

Plugin Claude Code

Plugin marketplace listing 2 plugins: academic-research, editorial-tools.

mronkko/claude-academic-research

Plugin Claude Code

Rule-books and procedures for academic research with Claude Code and Antigravity: MCP-grounded citations, empirical integrity, systematic reviews, Zotero operations, and a parallel-critic manuscript revision loop. Includes a chat-driven /setup wizard for non-technical users.

mronkko/claude-academic-research

Instructions file

Instructions for mronkko/claude-academic-research, covering claude.md, what this repo is, common commands, single test file or test and lint (ci blocker).

mronkko/claude-academic-research

Plugin Claude Code

Editorial workflows for journal editors and associate editors. Ships the suggesting-reviewers skill: given a manuscript abstract, propose peer reviewers from a journal's editorial board (eligibility-filtered) plus live external experts, or recommend an associate editor to handle the paper from the journal's sitting…

mronkko/claude-academic-research

Skill Claude CodeCodex

Use when an editor needs to identify peer reviewers OR an associate editor (AE) to handle a manuscript from its abstract — matching the paper's topics and methodology to editorial-board members, associate editors, and external experts and excluding ineligible people. Trigger phrases "suggest reviewers", "find…

mronkko/claude-academic-research

Skill Claude CodeCodex

Use when drafting or editing academic prose — topic sentences, paragraph structure, APA-style citations, active voice, tense, hedging conventions, term definitions. Fires eagerly on any .qmd / .Rmd / .md / .tex file in an academic-research project. Do NOT use for the revision workflow — use manuscript-revision +…

mronkko/claude-academic-research

Skill Claude CodeCodex

Use when screening or coding papers on a GPU cluster or batch scheduler instead of an LLM API — emitting a request manifest, submitting a SLURM job, collecting responses, applying them to Zotero. Trigger phrases "screen on the cluster", "run this on SLURM", "sbatch", "GPU node", "emit a manifest", "apply the…

mronkko/claude-academic-research

Skill Claude CodeCodex

Use when the user asks to revise, polish, or critique an academic manuscript, chapter, thesis, or paper through parallel critic perspectives. Trigger phrases "/critic-loop", "run critic-loop", "revise this manuscript", "run critics on this draft", "run a critical review", "review this chapter". Invoke as /critic-loop .

mronkko/claude-academic-research

Skill Claude CodeCodex

Use when editing manuscripts (.qmd, .Rmd, .ipynb, .tex, .md) that contain numbers, statistics, tables, test results, or methodology facts (search dates, model names, keyword strings). Enforces the rule that every quantitative or methodological claim in prose must come from a pipeline-generated authoritative file via…

mronkko/claude-academic-research

Skill Claude CodeCodex

Use when the user asks to fact-check a manuscript, verify citations, audit sources, or check whether cited papers actually support the claims attributed to them. Trigger phrases "fact-check", "verify citations", "audit citations", "check the sources", "do these papers actually say that", "verify the numbers in this…

mronkko/claude-academic-research

Skill Claude CodeCodex

Use when inserting a new citation into academic prose, attributing a finding to a source, or summarising what a paper says. Trigger phrases "cite this", "add a citation for X", "what does Smith (2019) say", "summarise this paper", "attribute this finding". Do NOT use for Zotero library housekeeping — use…

mronkko/claude-academic-research

Skill Claude CodeCodex

Use when the user asks to revise, polish, improve, critique, or finalize an existing academic draft — manuscripts, papers, theses, chapters, dissertations. Trigger phrases "revise this draft", "polish this chapter", "finalize this manuscript", "improve this paper", "critique this section", "review this thesis". Do NOT…

mronkko/claude-academic-research

Skill Claude CodeCodex

Use when the user invokes /setup (or asks to "configure setup", "run setup wizard", "configure the academic-research project/plugin"), asks to add or rotate API keys (Zotero, Elsevier, WoS, Semantic Scholar, Wiley TDM, OpenAlex, Gemini, OpenAI), switch LLM provider, register MCP servers, or patch permission rules.…

mronkko/claude-academic-research

Skill Claude CodeCodex

Use when running a full systematic literature review (SLR) — PRISMA-style search, screening, coding, and export. Trigger phrases "systematic review", "SLR", "PRISMA", "screen papers", "code papers", "full-text screening". Do NOT use for isolated Zotero enrichment — use zotero-operations; for screening on a GPU cluster…

mronkko/claude-academic-research

Skill Claude CodeCodex

Use when verifying that a citation in a manuscript is honestly supported by its source — a sub-skill called by fact-check and by the evidence critic inside critic-loop. Loaded via REQUIRED SUB-SKILL: verifying-citations from a calling skill; not invoked standalone by end users. Defines the classification scheme, the…

mronkko/claude-academic-research

Skill Claude CodeCodex

Use when the user asks to work with a Zotero library — adding abstracts, attaching PDFs, enriching metadata, importing items, deduplicating, fixing BBT (Better BibTeX) citation keys, or writing child notes. Trigger phrases "add abstracts to Zotero", "attach PDFs", "enrich Zotero library", "fix citation keys", "find…