Instructions file GitHub Copilot
Instructions for omar-A-hassan/medsci-agent, covering project guidelines, code style, architecture, build and test and testing conventions.
18 5mo ago A 907 tokens
original MIT
ace
02Agent
ACE learning controller — executes ace-mcp tools directly with no planning overhead.
18 5mo ago A 14 tokens
original MIT
drug
03Agent
Standalone specialist for drug discovery: molecular analysis, ADMET, compound search.
18 5mo ago A 14 tokens
original MIT
imaging
04Agent
Standalone specialist for medical image analysis: X-ray, pathology, dermatology.
18 5mo ago A 14 tokens
original MIT
medsci
05Agent
Scientific research orchestrator — routes queries to domain MCP toolchains and synthesizes cross-domain results.
18 5mo ago A 18 tokens
original MIT
omics
06Agent
Standalone specialist for multi-omics analysis: single-cell, bulk RNA-seq, proteomics.
18 5mo ago A 18 tokens
original MIT
protein
07Agent
Standalone specialist for protein design: sequence analysis, structure prediction, antibody design.
18 5mo ago A 14 tokens
original MIT
ace-learn
08Command
Learn from the latest completed task using ACE post-run feedback (gated; used by auto-hook and manual fallback).
18 5mo ago A 23 tokens
original MIT
Command
Inspect ACE skillbook strategies for a MedSci domain session.
18 5mo ago A 11 tokens
original MIT
Command
Create concise handoff note for next agent/human.
18 5mo ago A 10 tokens
original MIT
lit-deep
11Command
Run deep literature workflow (discovery, acquisition, then PaperQA synthesis).
18 5mo ago A 15 tokens
original MIT
qc-check
12Command
Maker-checker quality gate for scientific outputs.
18 5mo ago A 8 tokens
original MIT
sandbox-job
13Command
Execute one isolated sandbox job with artifacts and teardown.
18 5mo ago A 9 tokens
original MIT
triage
14Command
Triage a biomedical request and select the minimal sequential MCP workflow.
18 5mo ago A 12 tokens
original MIT
alphafold
15Skill Claude CodeCodex
AlphaFold DB for predicted protein structures and pLDDT confidence scores.
18 5mo ago A 18 tokens
original MIT
biopython
16Skill Claude CodeCodex
Molecular biology toolkit. Use for FASTA parsing, sequence analysis, and translation.
18 5mo ago A 21 tokens
original MIT
chembl
17Skill Claude CodeCodex
ChEMBL database access for bioactivity data and target search.
18 5mo ago A 15 tokens
original MIT
datamol
18Skill Claude CodeCodex
Datamol for molecular manipulation, SMILES processing, and cheminformatics.
18 5mo ago A 19 tokens
original MIT
deepchem
19Skill Claude CodeCodex
Molecular ML with DeepChem - featurizers, models, and molecular property prediction.
18 5mo ago A 20 tokens
original MIT
esm
20Skill Claude CodeCodex
ESM protein language models for sequence embeddings and structure prediction.
18 5mo ago A 13 tokens
original MIT
Skill Claude CodeCodex
Structured hypothesis formulation for scientific research. Use when generating testable hypotheses from observations.
18 5mo ago A 20 tokens
original MIT
Skill Claude CodeCodex
Systematic literature review methodology, search strategy, and PRISMA reporting.
18 5mo ago A 18 tokens
original MIT
opentargets
23Skill Claude CodeCodex
Open Targets Platform for target-disease associations and genetic evidence.
18 5mo ago A 16 tokens
original MIT
Skill Claude CodeCodex
Shared operational contract for all MedSci agents: sequential execution, planning phase, retry limits, evidence standards.
18 5mo ago A 27 tokens
original MIT