Team-yPark

Team-yPark/skills

Plugin Claude Code

Bioinformatics & Computational-biology skills for Claude Code agents.

Team-yPark/skills

Skill Claude CodeCodex

Consult the stored domain-knowledge base while working on any biology, biochemistry, genetics, genomics, bioinformatics, proteomics, machine-learning, or statistics task — recall what is already known before answering. Use by DEFAULT whenever a prompt touches a scientific/domain topic (check the base first); keywords…

Team-yPark/skills

Skill Claude CodeCodex

Builds and curates the domain-knowledge base — researches a durable scientific fact, distils it, and records it as a sourced entry (biology, biochemistry, genetics, genomics, proteomics, bioinformatics, machine-learning, statistics). Use when the task is to ADD, record, extract, or update domain knowledge — keywords…

Team-yPark/skills

Skill Claude CodeCodex

Acquires organism reference data (genome FASTA, GTF/GFF annotation) from Ensembl, UCSC, NCBI, or GENCODE, stores it under data/ / with provenance, builds derived artifacts and aligner indexes, and wires the paths into lib/common.sh for downstream scripts. Use when setting up or fixing reference data for an organism …

Team-yPark/skills

Skill Claude CodeCodex

Predict and analyze a protein's 3D structure from its amino-acid sequence — choose the right model (AlphaFold2/ColabFold, AlphaFold3, Boltz, ESMFold), get a structure, and interpret the result. Use when the task involves protein structure from sequence, folding a protein, a FASTA/UniProt sequence → structure, protein…

Team-yPark/skills

Skill Claude CodeCodex

Builds sequencing data download and preprocessing pipeline scripts (SRA/GEO download → adapter trim → contaminant filter → alignment → BAM) as idempotent, resumable bash. Use when writing, extending, or debugging a script that handles sequencing data, RNA-seq, Ribo-seq, ribosome profiling, GEO/SRA raw data, FASTQ…