Skill Claude CodeCodex
Sets up a new or existing project with the lab conventions harness - runs deploy.sh, then interviews the user to fill in the project CLAUDE.md. Also migrates projects from the pre-v3 numbered-file layout. Invoke with /bootstrapping-project when the user asks to set up a project with lab conventions, deploy the…
Skill Claude CodeCodex
Robustness checks required before any headline scientific claim - multiverse sweep, positive/negative controls, sensitivity analysis, blind-ish development, matched to the project's declared inference regime. Use whenever an analysis result is about to be treated as a finding, whenever a result enters a paper, a…
Skill Claude CodeCodex
Composes headline result figures as interpretation dashboards - the result juxtaposed with schematics of every competing hypothesis rendered through the same plot function, plus self-documenting text, housed in a narrated results notebook. Use whenever creating or revising a headline or final figure, whenever a result…
Skill Claude CodeCodex
Maintains the append-only per-analysis decision log that records what was tried, chosen, ruled out, and why. Use whenever an analytic decision is made (exclusion, transform, threshold, model choice), whenever a fork is resolved with the user, whenever a result turns or an analysis session ends, and whenever starting…
Skill Claude CodeCodex
Governs how intermediate and derived scientific data is saved - which file formats (netCDF/parquet/zarr/NIfTI, never .npy/.pkl), what to save vs recompute, and the provenance every file must carry. Use whenever writing code that saves arrays, tables, model outputs, or any derived data file, whenever choosing a file…
Skill Claude CodeCodex
The lab's interpretation-ready reporting standard for every stated result - in prose, tables, figures, chat replies, or Slack messages. Use whenever reporting any statistic, effect, correlation, model fit, comparison, or null result, whenever summarizing what an analysis found, and whenever composing the results…
Skill Claude CodeCodex
Produce publication-quality scientific figures in a restrained, vision-science-inflected house style. Use this skill whenever the user asks for plots, figures, or visualizations for a paper, preprint, talk, or grant — especially for vision, psychophysics, neuroscience, or computational modeling work — and any time the…