tondevrel/scientific-agent-skills
Plugin Claude Code
Plugin marketplace listing 1 plugin: scientific-agent-skills.
19 7mo ago A
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original MIT
tondevrel/scientific-agent-skills
Plugin Claude Code
Agent skills for scientific computing, research workflows, and data analysis.
19 7mo ago A
tokens not measured
original MIT
tondevrel/scientific-agent-skills
MCP server Claude CodeCodexCursor +2
MCP server "example-server", hosted remotely at example.mcp.server.com, as configured in tondevrel/scientific-agent-skills.
19 7mo ago A
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original MIT
FORMAT
04tondevrel/scientific-agent-skills
Command
This folder contains slash commands - user-invocable actions that users explicitly call via /command-name.
19 7mo ago A 0 tokens
original MIT
tondevrel/scientific-agent-skills
Command
Example slash command - replace with your own.
19 7mo ago A 8 tokens
original MIT
ase
06tondevrel/scientific-agent-skills
Skill Claude CodeCodex
Atomic Simulation Environment - a set of tools for setting up, manipulating, running, visualizing, and analyzing atomistic simulations. Acts as a universal interface between Python and numerous quantum chemical and molecular dynamics codes. Use for building atomic structures, geometry optimization, molecular dynamics…
19 7mo ago A 115 tokens
original MIT
astropy
07tondevrel/scientific-agent-skills
Skill Claude CodeCodex
The core library for Astronomy and Astrophysics in Python. Provides data structures for coordinates, time, units, FITS files, and cosmological models. Essential for observational data reduction and theoretical astrophysics. Use when working with astronomical coordinates (RA/Dec), physical units, FITS files, time…
19 7mo ago A 75 tokens
original MIT
biopython
08tondevrel/scientific-agent-skills
Skill Claude CodeCodex
Comprehensive guide for Biopython - the premier Python library for computational biology and bioinformatics. Use for DNA/RNA/protein sequence analysis, file I/O (FASTA, FASTQ, GenBank, PDB), sequence alignment, BLAST searches, phylogenetic analysis, structure analysis, and NCBI database access.
19 7mo ago A 71 tokens
original MIT
chempy
09tondevrel/scientific-agent-skills
Skill Claude CodeCodex
A Python package useful for chemistry (mainly physical/analytical/inorganic chemistry). Features include balancing chemical reactions, chemical kinetics (ODE integration), chemical equilibria, ionic strength calculations, and unit handling. Use when working with chemical equations, reaction balancing, kinetic…
19 7mo ago A 79 tokens
original MIT
cobrapy
10tondevrel/scientific-agent-skills
Skill Claude CodeCodex
Constraints-Based Reconstruction and Analysis for Python. Used for modeling large-scale metabolic networks in microorganisms.
19 7mo ago A 23 tokens
original MIT
tondevrel/scientific-agent-skills
Skill Claude CodeCodex
Advanced sub-skill for Dask focused on distributed system performance, memory management, and task graph optimization. Covers cluster tuning, efficient serialization, data skew mitigation, and dashboard-driven debugging.
19 7mo ago A 42 tokens
original MIT
dask
12tondevrel/scientific-agent-skills
Skill Claude CodeCodex
A flexible library for parallel computing in Python. It scales Python libraries like NumPy, pandas, and scikit-learn to multi-core systems or distributed clusters. Features lazy evaluation and task scheduling for data that exceeds RAM capacity. Use for out-of-core computing, parallel processing, distributed computing…
19 7mo ago A 97 tokens
original MIT
duckdb
13tondevrel/scientific-agent-skills
Skill Claude CodeCodex
An analytical in-process SQL database management system. Designed for fast analytical queries (OLAP). Highly interoperable with Python's data ecosystem (Pandas, NumPy, Arrow, Polars). Supports querying files (CSV, Parquet, JSON) directly without an ingestion step. Use for complex SQL queries on Pandas/Polars data…
19 7mo ago A 105 tokens
original MIT
tondevrel/scientific-agent-skills
Skill Claude CodeCodex
Example skill template. Replace this description with keywords and triggers for your actual skill. This description determines when the skill auto-loads based on conversation context.
19 7mo ago A 34 tokens
original MIT
tondevrel/scientific-agent-skills
Skill Claude CodeCodex
Dual skill for deploying scientific models. FastAPI provides a high-performance, asynchronous web framework for building APIs with automatic documentation. Streamlit enables rapid creation of interactive data applications and dashboards directly from Python scripts. Load when working with web APIs, model serving, REST…
19 7mo ago A 89 tokens
original MIT
geopandas
16tondevrel/scientific-agent-skills
Skill Claude CodeCodex
Open source project to make working with geospatial data in python easier. Extends the datatypes used by pandas to allow spatial operations on geometric types. Built on top of Shapely, Fiona, and Pyproj. Use for reading and writing spatial formats (Shapefile, GeoJSON, GeoPackage, KML), performing spatial joins…
19 7mo ago A 126 tokens
original MIT
h5py
17tondevrel/scientific-agent-skills
Skill Claude CodeCodex
A Pythonic interface to the HDF5 binary data format. It allows you to store huge amounts of numerical data and easily manipulate that data from NumPy. Features a hierarchical structure similar to a file system. Use for storing datasets larger than RAM, organizing complex scientific data hierarchically, storing…
19 7mo ago A 91 tokens
original MIT
jax-pde
18tondevrel/scientific-agent-skills
Skill Claude CodeCodex
Advanced sub-skill for JAX focused on solving Partial Differential Equations (PDEs) and Differentiable Physics. Covers Finite Difference Methods (FDM), Neural Operators, and Physics-Informed Neural Networks (PINNs).
19 7mo ago A 51 tokens
original MIT
jax
19tondevrel/scientific-agent-skills
Skill Claude CodeCodex
Composable transformations of Python+NumPy programs. Differentiate, vectorize, JIT-compile to GPU/TPU. Built for high-performance machine learning research and complex scientific simulations. Use for automatic differentiation, GPU/TPU acceleration, higher-order derivatives, physics-informed machine learning…
19 7mo ago A 68 tokens
original MIT
lifelines
20tondevrel/scientific-agent-skills
Skill Claude CodeCodex
Complete survival analysis library in Python. Handles right-censored data, Kaplan-Meier curves, and Cox regression. Standard for clinical trial analysis and epidemiology.
19 7mo ago A 34 tokens
original MIT
tondevrel/scientific-agent-skills
Skill Claude CodeCodex
Professional sub-skill for Matplotlib focused on high-performance animations, complex multi-figure layouts (GridSpec), interactive widgets, and publication-ready typography (LaTeX/PGF).
19 7mo ago A 41 tokens
original MIT
matplotlib
22tondevrel/scientific-agent-skills
Skill Claude CodeCodex
The foundational library for creating static, animated, and interactive visualizations in Python. Highly customizable and the industry standard for publication-quality figures. Use for 2D plotting, scientific data visualization, heatmaps, contours, vector fields, multi-panel figures, LaTeX-formatted plots, custom…
19 7mo ago A 76 tokens
original MIT
mdanalysis
23tondevrel/scientific-agent-skills
Skill Claude CodeCodex
Comprehensive guide for MDAnalysis - the Python library for analyzing molecular dynamics trajectories. Use for trajectory loading, RMSD/RMSF calculations, distance/angle/dihedral analysis, atom selections, hydrogen bonds, solvent accessible surface area, protein structure analysis, membrane analysis, and integration…
19 7mo ago A 70 tokens
original MIT
mne
24tondevrel/scientific-agent-skills
Skill Claude CodeCodex
Open-source Python package for exploring, visualizing, and analyzing human neurophysiological data including EEG, MEG, sEEG, and ECoG.
19 7mo ago A 36 tokens
original MIT