tondevrel/scientific-agent-skills
Skill Claude CodeCodex
Scalable toolkit for analyzing single-cell gene expression data. Built on top of Anndata, focusing on clustering, trajectory inference, and visualization.
tondevrel/scientific-agent-skills
Skill Claude CodeCodex
Library for bioinformatics and community ecology statistics. Provides data structures and algorithms for sequences, alignments, phylogenetics, and diversity analysis. Essential for microbiome research and ecological data science. Use for alpha/beta diversity metrics, ordination (PCoA), phylogenetic trees, sequence…
tondevrel/scientific-agent-skills
Skill Claude CodeCodex
A collection of algorithms for image processing in Python. Built on NumPy, SciPy, and Cython. It focuses on scientific image analysis including segmentation, geometric transformations, color space manipulation, analysis, and filtering.
tondevrel/scientific-agent-skills
Skill Claude CodeCodex
The industry standard library for machine learning in Python. Provides simple and efficient tools for predictive data analysis, covering classification, regression, clustering, dimensionality reduction, model selection, and preprocessing.
tondevrel/scientific-agent-skills
Skill Claude CodeCodex
Video processing library for scientists. Provides easy access to video files using FFmpeg, motion estimation algorithms, and video quality metrics. Built on NumPy and designed for high-performance research in computer vision and image sequence analysis. Use when working with video files, motion estimation, video…
tondevrel/scientific-agent-skills
Skill Claude CodeCodex
Comprehensive guide for SciPy - the fundamental library for scientific and technical computing in Python. Use for integration, optimization, interpolation, linear algebra, signal processing, statistics, ODEs, Fourier transforms, and advanced scientific algorithms. Built on NumPy and essential for research and…
tondevrel/scientific-agent-skills
Skill Claude CodeCodex
A Python data visualization library based on matplotlib. It provides a high-level interface for drawing attractive and informative statistical graphics. Great for exploring relationships between variables and visualizing distributions. Use for statistical data visualization, exploratory data analysis (EDA)…
tondevrel/scientific-agent-skills
Skill Claude CodeCodex
Manipulation and analysis of planar geometric objects. Based on the widely deployed GEOS library. Provides data structures for points, curves, and surfaces, and standardized algorithms for geometric operations. Use for 2D geometry operations, spatial relationships, set-theoretic operations (intersection, union…
tondevrel/scientific-agent-skills
Skill Claude CodeCodex
A process-based discrete-event simulation framework. Use for modeling queuing systems, supply chains, manufacturing processes, network simulation, project management, and any system where events occur at specific points in time. Load when working with discrete event simulation, process modeling, resource allocation…
tondevrel/scientific-agent-skills
Skill Claude CodeCodex
Professional sub-skill for scikit-learn focused on robust pipeline architecture, custom estimator development, advanced feature engineering, and rigorous model validation. Covers Target Encoding, Nested Cross-Validation, and Production Deployment.
tondevrel/scientific-agent-skills
Skill Claude CodeCodex
Advanced sub-skill for scikit-learn focused on model interpretability, feature importance, and diagnostic tools. Covers global and local explanations using built-in inspection tools and SHAP/LIME integrations.
At most 3 mods per repository are shown here — the rest are on their repository pages: