usathyan

usathyan/epistract

Plugin Claude Code

Plugin marketplace listing 1 plugin: epistract.

usathyan/epistract

Plugin Claude Code

Cross-domain knowledge graph framework. Extract structured knowledge from any document corpus. Pre-built domains: drug discovery (biomedical literature), contract analysis (vendor contracts), clinical trials (ClinicalTrials.gov v2 + PubChem enrichment via --enrich), and FDA product labels (Structured Product Labeling.

usathyan/epistract

Instructions file

Instructions for usathyan/epistract, covering project, constraints, technology stack, languages and runtime.

usathyan/epistract

Agent

Fetch a batch of PubMed articles for the epistract corpus. Dispatched by /epistract-acquire when processing many articles in parallel. Each agent handles a batch of PMIDs independently.

usathyan/epistract

Agent

Extract entities and relations from a single document for the epistract knowledge graph. Dispatched by /epistract-ingest when processing multiple documents in parallel. Each agent handles one document independently. Domain-aware: reads the domain SKILL.md for entity types, relation types, and naming standards.

usathyan/epistract

Agent

Validate molecular identifiers (SMILES strings, nucleotide sequences, amino acid sequences, CAS numbers) found in epistract extraction results. Uses RDKit for chemistry and Biopython for sequences. Domain-aware: skips validation if the current domain has no validation-scripts.

usathyan/epistract

Command

Search PubMed and download articles into a local corpus for epistract ingestion.

usathyan/epistract

Command

Add source documents to an epistract project corpus (deduplicated by content hash).

usathyan/epistract

Command

Fetch one or more URLs into an epistract project corpus (deduplicated by content hash).

usathyan/epistract

Command

Ask questions about extracted contract knowledge graph — answers with citations, cost breakdowns, and risk analysis.

usathyan/epistract

Command

Build knowledge graph from existing epistract extractions.

usathyan/epistract

Command

Launch the interactive web workbench for exploring a knowledge graph — chat + force-directed graph + source inspector.

usathyan/epistract

Command

Remove a domain — archive to a recoverable location or permanently delete — with explicit confirmation.

usathyan/epistract

Command

List all installed domains — active and archived — with entity type count, relation type count, last-modified date, and status.

usathyan/epistract

Command

Edit a domain component — schema, extraction prompt, or epistemic analysis — via a guided conversational wizard.

usathyan/epistract

Command

Create a new domain package from sample documents using guided wizard.

usathyan/epistract

Command

Run arXiv-backed quality passes over a project's knowledge graph — triple judging, entity resolution, and a bi-temporal epistemic layer.

usathyan/epistract

Command

Analyze epistemic patterns (hypotheses, contradictions, conditional claims) in a built knowledge graph and produce a Super Domain claims layer.

usathyan/epistract

Command

Export knowledge graph to GraphML, GEXF, CSV, SQLite, or JSON.

usathyan/epistract

Command

Incrementally index an epistract project's corpus and graph for hybrid search.

usathyan/epistract

Command

Ingest scientific documents and build a drug discovery knowledge graph.

usathyan/epistract

Command

Create a new named epistract project (persistent dataset) with its own corpus, graph, and search index.

usathyan/epistract

Command

List, inspect, or delete epistract projects in the registry.

usathyan/epistract

Command

Search entities in the drug discovery knowledge graph.