Skill Claude CodeCodex
Judge and reshape the story told by a manuscript and its figure deck. Use when revising paper structure, testing whether Figure 1 is a hook, ordering figures, moving panels, identifying missing analyses, or defining the claim passed to figure-composer.
Skill Claude CodeCodex
Use this skill when the user has attached a PDF, paper, report, or other document and the answer needs its content: summarize a section, compare sections, read specific pages, check the table of contents, or read a value off a figure. The read tool cannot parse PDF binary — python is the extraction path. Provides…
Skill Claude CodeCodex
Use when creating, migrating, or debugging pixi environments, especially for scientific Python, bioinformatics, single-cell analysis, CUDA/PyTorch, Jupyter/VS Code kernels, conda-to-pixi migration, or conda + PyPI mixed dependency issues.
Skill Claude CodeCodex
Inspect a registered execution server before compute planning and interpret its persisted capability profile. Use when a server is added, when the user clicks Probe, before enabling an unfamiliar SSH/WSL resource, or when deciding whether GPU, sudo/root, a scheduler, Python, R, conda, mamba, or environment modules are…
Skill Claude CodeCodex
Plan, configure, validate, and document portable public-bioinformatics data acquisition. Use for GEO/GSE/GDS, SRA/ENA, TCGA/GDC, GTEx, DepMap, public expression matrices, raw reads, release files, manifests, resumable downloads, and reusable local caches. Keep the workflow provider-neutral: DepMap is one optional…
Skill Claude CodeCodex
Submit recoverable SSH-direct research Runs with live progress cards and model-free monitoring.
Skill Claude CodeCodex
Wisp-science's actual agent tool surface and runtime boundaries. Load this when deciding which Wisp tool can perform a task, checking whether Python can reach agent or desktop capabilities, choosing between interactive analysis and persisted Runs, or answering questions about delegation, images, skills, memory…
Skill Claude CodeCodex
Use when designing, reviewing, or implementing single-cell RNA-seq QC in Python or R with a human-in-the-loop, data-driven approach. Trigger for scRNA QC metrics, per-sample diagnosis, threshold discussion, mitochondrial/ambient/doublet assessment, MAD vs fixed cutoffs, or refactoring automated merge-first QC. The…
Skill Claude CodeCodex
Create, update, validate, and evaluate Wisp skills. Use when authoring a project-local or installable skill, refining its trigger description, adding deterministic scripts or Python sidecars, or testing whether another Agent can follow the workflow.
Skill Claude CodeCodex
Turn a scientific conversation, paper takeaway, or figure story into paste-ready social copy. Use when the user asks for 小红书文案, a Xiaohongshu note, 微信/朋友圈, 公众号草稿, a tweet, Twitter/X copy, or share-to-social text from a Wisp session. Ask which platform unless the user already named one.
Skill Claude CodeCodex
Build, audit, authorize, recover, or finalize dynamic Zotero citations and bibliographies in Microsoft Word DOCX files with a protected-source, digest-bound workflow. Use for Word–Zotero citation conversion, static OOXML citation audits, mocked/offline validation, Refresh authorization/report review, UI-evidence…
Instructions file CodexOpenCode
Instructions for xuzhougeng/wispterm, covering agents.md, architecture, ui presentation styles, cohesion and coupling and integration layer vs feature domains.
Skill Claude CodeCodex
Use when the user asks to inspect, summarize, audit, compare, or troubleshoot this computer's hardware, operating system, CPU, memory, GPU, disk, or local runtime configuration.
Skill Claude CodeCodex
Use when the user asks about TBtools, TBtools-II, TBtools RPC API, TBtools CLI, or bioinformatics operations available through TBtools such as sequence manipulation, BLAST, GFF/GTF/GXF processing, expression tables, heatmaps, trees, MCScanX, DIAMOND, HMMER, MUSCLE, and IQ-TREE.
Skill Claude CodeCodex
Use when a user wants to report, troubleshoot, or collect context for a WispTerm issue, including crashes, rendering/DPI glitches, high CPU, keyboard/input bugs, selection/copy/scrolling, SSH/SCP failures, SSH image preview failures, HTML preview/browser panel failures, SSH disconnects such as…
Skill Claude CodeCodex
Use when the user wants to install, repair, or re-apply WispTerm notification reminders (Claude Code Stop + Notification, and Codex turn-complete) in a local WSL/macOS/Linux/PowerShell shell or a saved WispTerm SSH profile, so finishes and confirmation prompts surface inside WispTerm.
Skill Claude CodeCodex
Browse or inspect live web pages.
Skill Claude CodeCodex
Use this skill when the user asks to inspect or summarize PDF documents.
xuzhougeng/ScientificFigureLibrary
Plugin Claude Code
Search Local Published, bundled Community, FigureYa, and explicitly trusted personal Providers, then govern immutable figure references and staged publication.
xuzhougeng/ScientificFigureLibrary
Skill Claude CodeCodex
Build, review, search, select, materialize, and safely publish immutable scientific-figure references from Local Published, bundled Community, FigureYa, and explicitly trusted personal Providers.
Instructions file CodexOpenCode
AGENTS.md instructions for xuzhougeng/agent-control, covering repository guidelines, project structure & module organization, build, test, and development commands, coding style & naming conventions and web ui expectations.
Plugin Claude Code
AI-native SVG figure editor MCP App for Claude Science and Wisp Science. Edit matplotlib, ggplot2, and Illustrator SVGs by hand or natural language.
Instructions file CodexOpenCode
AGENTS.md instructions for xuzhougeng/svg-editor, covering svg editor, layout and commands.
Skill Claude CodeCodex
Open and surgically edit SVG scientific figures in the SVG Editor MCP App. Use when the user wants to change text, colors, fonts, positions, legends, or panel letters in an existing SVG by hand, or by selecting elements and instructing the host assistant.