yale-som-hpc

yale-som-hpc/claude-code-marketplace

Plugin Claude Code

Skills for Yale SOM research computing: HPC, Slurm, Python, R, Git, and reproducible coding.

yale-som-hpc/claude-code-marketplace

Plugin Claude Code

Yale SOM research computing skills: HPC, Slurm, GPUs, Python, R, Stata, Git, and reproducible coding.

yale-som-hpc/claude-code-marketplace

Command

Check whether your recent Slurm jobs were right-sized, in plain language.

yale-som-hpc/claude-code-marketplace

Command

Set up a durable connection to the cluster that survives laptop sleep/wifi drops.

yale-som-hpc/claude-code-marketplace

Command

Scaffold a reproducible Yale SOM HPC research project.

yale-som-hpc/claude-code-marketplace

Skill Claude CodeCodex

Make slow or memory-bound Python fast on the Yale SOM HPC cluster — profile, push work into DuckDB/Polars/Arrow, vectorize/Numba, then parallelize or use a GPU. Also covers data larger than a job's RAM (Parquet, query engines, sampling). TRIGGER when a Python job on the cluster is slow, CPU-bound, or memory-heavy…

yale-som-hpc/claude-code-marketplace

Skill Claude CodeCodex

Download, query, scrape, and call APIs from the Yale SOM HPC cluster without leaking credentials, repeating expensive requests, or getting the shared outbound IP blocked. TRIGGER when fetching datasets onto /gpfs, calling WRDS/REST APIs, scraping, caching downloads, or handling credentials on the cluster.

yale-som-hpc/claude-code-marketplace

Skill Claude CodeCodex

Review code, diffs, or PRs for correctness, plus research/cluster pitfalls — hardcoded scratch paths, resource mismatch, GPFS tiny-file storms, package installs inside arrays. TRIGGER when reviewing code or a diff/PR, or before committing.

yale-som-hpc/claude-code-marketplace

Skill Claude CodeCodex

How to write Python well — uv environments, formatting, CLI scripts, logging, seeds. TRIGGER when authoring or editing .py files. For running Python on the Yale SOM HPC cluster (sbatch, Slurm, uv on /gpfs), use running-python instead.

yale-som-hpc/claude-code-marketplace

Skill Claude CodeCodex

How to write R well — renv, tidyverse/data.table, project paths, style, scripts, seeds. TRIGGER when authoring or editing .R/.Rmd/.qmd files. For running R on the Yale SOM HPC cluster (Slurm, renv on /gpfs), use running-r instead.

yale-som-hpc/claude-code-marketplace

Skill Claude CodeCodex

Connect to the Yale SOM HPC cluster (hpc.som.yale.edu) over SSH with keys, agents, jump hosts, and tunnels — no copied private keys. TRIGGER when SSHing to the Yale SOM HPC cluster, setting up VS Code/Jupyter tunnels to a cluster compute node, forwarding ports through the cluster login node, or troubleshooting cluster…

yale-som-hpc/claude-code-marketplace

Skill Claude CodeCodex

Install software on the Yale SOM HPC cluster with Lmod modules, uv, static/musl binaries, and Apptainer — no sudo. TRIGGER when installing tools or packages on the Yale SOM HPC cluster, hitting GLIBC errors on cluster nodes, building from source on the cluster, or using Apptainer containers there.

yale-som-hpc/claude-code-marketplace

Skill Claude CodeCodex

Submit, monitor, cancel, array, and chain Slurm jobs on the Yale SOM HPC cluster. TRIGGER when running, submitting, or scheduling any job or analysis on the cluster (even phrased plainly, e.g. "run my regression on the cluster"), writing sbatch scripts, choosing partitions/resources, or using job arrays, dependencies…

yale-som-hpc/claude-code-marketplace

Skill Claude CodeCodex

Mental model for the Yale SOM HPC cluster — login vs compute nodes, partitions, GPFS, Slurm, default safety rules. TRIGGER when the user is working on the Yale SOM HPC cluster and needs orientation, is deciding where work belongs on the cluster, or needs high-level HPC workflow guidance before reaching for a…

yale-som-hpc/claude-code-marketplace

Skill Claude CodeCodex

Choose threads, processes, queues, and Slurm arrays for Python on the Yale SOM HPC cluster. TRIGGER when running multiprocessing/concurrent.futures/joblib/Dask/Ray on the cluster, writing Slurm array jobs there, or sizing workers to SLURMCPUSPERTASK.

yale-som-hpc/claude-code-marketplace

Skill Claude CodeCodex

Cross-cutting research-coding principles. TRIGGER when writing or reviewing research code.

yale-som-hpc/claude-code-marketplace

Skill Claude CodeCodex

Run Python on the Yale SOM HPC cluster with uv, Slurm, thread control, logging, and resumable outputs. TRIGGER when writing Python sbatch scripts for the Yale SOM HPC cluster, creating uv environments under /gpfs, or debugging Python Slurm jobs on the cluster.

yale-som-hpc/claude-code-marketplace

Skill Claude CodeCodex

Run R on the Yale SOM HPC cluster with Lmod modules, renv, batch scripts, and BLAS/OpenMP thread control. TRIGGER when writing R Slurm jobs on the Yale SOM HPC cluster, using renv on the cluster, installing R packages on the cluster, or running Rscript in batch mode there.

yale-som-hpc/claude-code-marketplace

Skill Claude CodeCodex

Run Stata batch jobs on the Yale SOM HPC cluster with logs, scratch temp, CPU matching, and license courtesy. TRIGGER when writing Stata sbatch scripts for the Yale SOM HPC cluster, choosing Stata/MP cores there, or diagnosing Stata batch jobs/licenses on the cluster.

yale-som-hpc/claude-code-marketplace

Skill Claude CodeCodex

Build resumable, durable caches for high-volume web scraping/crawling on the Yale SOM HPC cluster — SQLite WAL catalogs, batched writers, single-archive body storage, and /local staging — without a GPFS metadata storm. TRIGGER when scraping or crawling many thousands of pages, building a resumable fetch catalog/cache…

yale-som-hpc/claude-code-marketplace

Skill Claude CodeCodex

Diagnose whether a Yale SOM HPC cluster Slurm job used its requested CPUs, memory, GPUs, and time wisely, then right-size the next request. TRIGGER when a Slurm job on the Yale SOM HPC cluster is slow, killed, pending, idle, over-requested, ran out of memory, or failed, or whenever a job just finished and should be…

yale-som-hpc/claude-code-marketplace

Skill Claude CodeCodex

Create a research project layout under /gpfs/project on the Yale SOM HPC cluster — reproducible, resumable, safe for shared use. TRIGGER when starting or reorganizing a project on the Yale SOM HPC cluster, choosing GPFS directories, or setting up cluster-side logs, lockfiles, and Slurm scripts.

yale-som-hpc/claude-code-marketplace

Skill Claude CodeCodex

Keep work alive across dropped SSH connections to the Yale SOM HPC cluster, and decide where Claude Code itself runs (login node vs. your laptop driving the cluster). TRIGGER when a cluster session dies on sleep/wifi drop, running Claude Code or a long agent against the cluster, keeping tmux/zmx sessions alive there…

yale-som-hpc/claude-code-marketplace

Skill Claude CodeCodex

Capture a project's commands as named, rerunnable recipes — via shell script, Makefile, or justfile — so analysis steps are reproducible and the agent can rerun them. TRIGGER when automating or documenting project commands, writing a justfile/Makefile/run script, or choosing among shell vs make vs just.