ZimoLiao

56 mods across 1 repository, 566 stars between them.

scholaraio

02

ZimoLiao/scholaraio

Plugin Claude Code

Scholar All-in-One: an academic harness for AI agents. Carry evidence, persistent research context, repeatable workflows, reviewable outputs, and verification across agent sessions. Requires Python 3.10+ and pip install.

566 yesterday A tokens not measured copy · 86% MIT

academic-writing

03

ZimoLiao/scholaraio

Skill Claude CodeCodex

Use when the user needs help choosing or organizing an academic-writing workflow by deliverable, stage, or format, including review articles, guided reading, paper sections, PPT or slides, posters, and technical reports.

566 yesterday A 45 tokens original MIT

arxiv

04

ZimoLiao/scholaraio

Skill Claude CodeCodex

Use when the user wants to browse arXiv preprints, search arXiv directly, fetch a PDF by arXiv ID or URL, or send a preprint into the ScholarAIO ingest pipeline.

566 yesterday A 46 tokens original MIT

audit

05

ZimoLiao/scholaraio

Skill Claude CodeCodex

Use when the user wants to check paper-library data quality, diagnose missing metadata, filename issues, DOI duplicates, title mismatches, or repairable metadata problems.

566 yesterday A 34 tokens original MIT

backup

06

ZimoLiao/scholaraio

Skill Claude CodeCodex

Use when the user wants to back up or restore ScholarAIO data through configured rsync targets, inspect backup plans, or run a dry-run before transferring files.

566 yesterday C 35 tokens original MIT

bioinformatics

07

ZimoLiao/scholaraio

Skill Claude CodeCodex

Use when working on bioinformatics workflows such as alignment, variant calling, phylogenetics, or protein-structure analysis, especially across BLAST, minimap2, samtools, bcftools, MAFFT, IQ-TREE, or ESMFold.

566 yesterday A 55 tokens original MIT

citation-check

08

ZimoLiao/scholaraio

Skill Claude CodeCodex

Use when the user wants to verify citations in AI-generated or human-written text against the local knowledge base and catch hallucinated, wrong, or missing references.

566 yesterday A 34 tokens original MIT

citations

09

ZimoLiao/scholaraio

Skill Claude CodeCodex

Use when the user asks about highly cited papers, citation rankings, or updating citation counts from external APIs.

566 yesterday A 24 tokens original MIT

document

10

ZimoLiao/scholaraio

Skill Claude CodeCodex

Use when the user wants to create or inspect DOCX, PPTX, or XLSX files, generate a downloadable Office deliverable, or verify its structure and layout warnings with scholaraio document inspect.

566 yesterday A 43 tokens original MIT

draw

11

ZimoLiao/scholaraio

Skill Claude CodeCodex

Use when the user wants diagrams, flowcharts, architecture visuals, data relationships, timelines, concept maps, Mermaid, Graphviz, drawio, or polished paper figures generated from structured text or IR.

566 yesterday B 42 tokens original MIT

enrich

12

ZimoLiao/scholaraio

Skill Claude CodeCodex

Use when the user wants LLM-based metadata enrichment, table-of-contents extraction, L3 conclusion extraction, or abstract backfilling for library papers.

566 yesterday A 34 tokens original MIT

explore

13

ZimoLiao/scholaraio

Skill Claude CodeCodex

Use when the user wants to survey a journal or field, fetch papers from OpenAlex, cluster topics, build exploration embeddings, or search named explore libraries under data/libraries/explore.

566 yesterday A 40 tokens original MIT

export

14

ZimoLiao/scholaraio

Skill Claude CodeCodex

Use when the user needs BibTeX, RIS, Markdown reference lists, filtered citation exports, custom citation styles, or a Markdown-to-DOCX export for sharing.

566 yesterday A 36 tokens original MIT

graph

15

ZimoLiao/scholaraio

Skill Claude CodeCodex

Use when the user asks about citation relationships, references, citing papers, shared references, bibliographic overlap, or graph-style paper connections.

566 yesterday A 29 tokens original MIT

gromacs

16

ZimoLiao/scholaraio

Skill Claude CodeCodex

Use when working on biomolecular molecular dynamics with GROMACS, including system setup, equilibration, production runs, trajectory analysis, or MM/PBSA-style post-processing.

566 yesterday A 39 tokens original MIT

import

17

ZimoLiao/scholaraio

Skill Claude CodeCodex

Use when the user wants to import papers from Endnote XML/RIS, Zotero Web API or local SQLite, attach PDFs, match PDFs to records, or supplement records with PDF content.

566 yesterday A 40 tokens original MIT

index

18

ZimoLiao/scholaraio

Skill Claude CodeCodex

Use when the user wants to rebuild or refresh ScholarAIO keyword, full-text, FTS5, FAISS, or semantic search indexes after data or metadata changes.

566 yesterday A 36 tokens original MIT

ingest-link

19

ZimoLiao/scholaraio

Skill Claude CodeCodex

Use when the user wants to ingest web URLs, online PDFs, rendered web pages, standards, manuals, or articles through qt-web-extractor into the normal document-ingest workflow.

566 yesterday A 40 tokens original MIT

ingest

20

ZimoLiao/scholaraio

Skill Claude CodeCodex

Use when the user wants to process new papers, patents, theses, documents, or proceedings from inbox queues into the knowledge base, run the ingest pipeline, or rebuild indexes.

566 yesterday A 38 tokens original MIT

insights

21

ZimoLiao/scholaraio

Skill Claude CodeCodex

Use when the user wants to analyze research behavior, search hot keywords, most-read papers, reading trends, active workspaces, or unread semantic neighbors.

566 yesterday A 33 tokens original MIT

lammps

22

ZimoLiao/scholaraio

Skill Claude CodeCodex

Use when working on classical materials simulations with LAMMPS, including potential selection, shock or deformation setups, thermodynamic runs, or structure analysis for solids and nanomaterials.

566 yesterday A 40 tokens original MIT

literature-review

23

ZimoLiao/scholaraio

Skill Claude CodeCodex

Use when the user wants to draft a literature review, survey a research area, summarize a field, organize workspace papers, identify gaps, or export review references.

566 yesterday A 36 tokens original MIT

metrics

24

ZimoLiao/scholaraio

Skill Claude CodeCodex

Use when the user asks about LLM token usage, API call timing, runtime metrics, cost signals, or performance statistics.

566 yesterday A 27 tokens original MIT