ci
01Agent Claude Code
CI and pre-commit orchestrator. Runs geo, tidyverse lint, stats, ghactions, and targets checks in sequence. Use before committing or in CI to get a full pipeline health report.
Agent Claude Code
CI and pre-commit orchestrator. Runs geo, tidyverse lint, stats, ghactions, and targets checks in sequence. Use before committing or in CI to get a full pipeline health report.
Agent Claude Code
Coder Alpha — correctness-first R coder. Prioritises well-tested, readable, conventional solutions. Invoked as a competing coder alongside beta and gamma.
Agent Claude Code
Coder Beta — performance-first R coder. Prioritises memory efficiency and speed for large raster/vector datasets. Invoked as a competing coder alongside alpha and gamma.
Agent Claude Code
Coder Gamma — minimalist R coder. Prioritises the simplest, shortest correct solution with the least abstraction. Invoked as a competing coder alongside alpha and beta.
Agent Claude Code
Code commenter and documentation reviewer. Use when ensuring R scripts are well-documented, section headers are clear, scientific rationale is explained, and an expert ecologist could follow the code without prior context.
Agent Claude Code
Geospatial reviewer. Use when verifying CRS consistency, raster resolution alignment, expected file presence, resampling methods, spatial joins, zonal statistics, or any spatial operation for scientific correctness.
Agent Claude Code
GitHub Actions compatibility reviewer. Use when checking that pipeline changes will run correctly on GitHub Actions (ubuntu-latest, adamwilsonlab/emma container). Flags interactive calls, hardcoded server paths, missing secrets, and targets that silently skip on CI.
Agent Claude Code
Scientific methods reviewer. Use when reviewing analytical design, covariate choices, spatial/temporal grain, extrapolation, validation strategy, or any aspect of scientific rigour from the perspective of a journal peer reviewer.
Agent Claude Code
Statistical accuracy reviewer. Use when checking statistical assumptions, flagging sample size issues, reviewing model methods, checking for data leakage, or validating uncertainty propagation.
Agent Claude Code
Targets pipeline reviewer. Use when verifying target dependencies are correct, dynamic branching is sound, format='file' targets write before returning, the tarrelease cache round-trip is consistent, and deployment guards are in place.
Agent Claude Code
Coder Alpha — correctness-first R coder. Prioritises well-tested, readable, conventional solutions. Invoked as a competing coder alongside beta and gamma.
Agent Claude Code
Coder Beta — performance-first R coder. Prioritises memory efficiency and speed for large raster/vector datasets. Invoked as a competing coder alongside alpha and gamma.
Agent Claude Code
Coder Gamma — minimalist R coder. Prioritises the simplest, shortest correct solution with the least abstraction. Invoked as a competing coder alongside alpha and beta.
Agent Claude Code
GitHub Actions compatibility reviewer. Use when checking that pipeline changes will run correctly on GitHub Actions (ubuntu-latest, adamwilsonlab/emma container) after server-side priming. Flags interactive calls, hardcoded server paths, missing secrets, and targets that silently skip on CI.
At most 3 mods per repository are shown here, and a mod shipped inside a plugin is left to that plugin's page — the rest are on their repository pages: