atomic-molecular-optical-physicist

atomic-molecular-optical-physicist is an agent for Claude Code from K-Dense-AI/scientific-agents. It costs 86 tokens per session (5,186 once invoked), scanned A, original, MIT.

A specialist for atomic, molecular, and optical physics, the study of how atoms, molecules, and light interact. It covers lasers, cooling and trapping atoms, quantum gases, spectroscopy, and precision measurements.

In plain words
What is it for?
Use it to design and analyze laser–atom experiments, model quantum systems, calibrate optical traps, and build precision measurement error budgets.
Why use it?
It helps connect experiments to physical models and identify errors from laser power, polarization, heating, temperature, or frequency shifts.

Agent for Claude Code

Written for Claude Code: shipped in a Claude Code plugin. Also seen: mentions AGENTS.md.

Part of the atomic-molecular-optical-physicist plugin — 1 agent shipped together

Good fit Use it to design and analyze laser–atom experiments, model quantum systems, calibrate optical traps, and build precision measurement error budgets.

Compare 6 agents from other repositories ↓
Install with agentmods
npx agentmods add agents/k-dense-ai/scientific-agents/atomic-molecular-optical-physicist
Install

Getting it into your agent

One page per mod, every tool's command on it. A separate URL per tool would split the same page into five that compete with each other.

Clone the repo
git clone --depth 1 https://github.com/K-Dense-AI/scientific-agents

Made for: Claude Code.

Or install atomic-molecular-optical-physicist, the plugin that ships this one along with the rest of its 1 agent.

Wrote this? Show the measurements

A badge with what this costs and how it scanned, read live from this page, so it follows the numbers instead of freezing them. Markdown for a README, HTML for a documentation site or a project page.

agentmods badge for atomic-molecular-optical-physicist

README.md
[![agentmods](https://agentmods.dev/badge/agents/k-dense-ai/scientific-agents/atomic-molecular-optical-physicist/github.svg)](https://agentmods.dev/agents/k-dense-ai/scientific-agents/atomic-molecular-optical-physicist)
Your own site
<a href="https://agentmods.dev/agents/k-dense-ai/scientific-agents/atomic-molecular-optical-physicist"><img src="https://agentmods.dev/badge/agents/k-dense-ai/scientific-agents/atomic-molecular-optical-physicist/github.svg" alt="Measured on agentmods" height="20"></a>

Or the 80×15 button, for a site that already has a row of RSS and ATOM ones. Only the verdict fits; the numbers stay here.

agentmods 80×15 button for atomic-molecular-optical-physicist

Your own site · 80×15
<a href="https://agentmods.dev/agents/k-dense-ai/scientific-agents/atomic-molecular-optical-physicist"><img src="https://agentmods.dev/badge/agents/k-dense-ai/scientific-agents/atomic-molecular-optical-physicist.svg" alt="Reviewed on agentmods" width="80" height="20"></a>
Per session 86 Only the description is in the session, so the agent can decide to use it. The body loads when it is invoked.
When invoked 5,186 The whole file, excluding the scripts and references it only reads on demand.
Security scan A 0 findings. A grade says what 26 rules found in the file — not that it is safe.
Origin original No closer match found in the catalogue.
Token cost

What it costs to keep this loaded

Counted locally with the o200k_base tokenizer, which is exact for GPT models; Claude uses its own tokenizer and its counts differ. Treat this as one consistent yardstick across the catalogue rather than a bill. Prices are per million input tokens.

ModelPer sessionOnce invoked
Fable 5.1 $0.00086 $0.05186
Opus 5 $0.00043 $0.02593
Sonnet 5 $0.00017 $0.01037
Haiku 4.5 $0.00009 $0.00519

Measured 5d ago against content hash 8472a1483e46, method: parsed. Prices are Anthropic first-party input rates as of 2026-09-09, from the pricing page.

Security

Grade A, and why

atomic-molecular-optical-physicist scanned grade A with 0 findings against 26 rules in 11 categories — prompt injection, anti-refusal, data exfiltration, privilege escalation, supply chain, agent snooping, system-prompt leakage, SSRF and excessive agency — measured 5d ago.

A static scan of the body, not an audit. Every finding is printed with the line that produced it so you can judge whether it matters here. A mod is markdown that instructs an agent; that is exactly why what it instructs is worth reading.

Nothing flagged

None of the 26 patterns this scan looks for appear in this file: no shell pipes, no recursive deletes, no credential paths, no hidden text, no instruction-override or anti-refusal phrasing, no agent-config snooping. That is not a guarantee, it is the absence of the things that are checkable.

scientific-agents/atomic-molecular-optical-physicist/agents/atomic-molecular-optical-physicist.md · 316 lines

How it starts

The opening of the file, as written. The whole thing — 316 lines — stays where its author put it; the contents beside it link to each section on GitHub.

AGENTS.md — Atomic, Molecular & Optical Physicist Agent

You are an experienced atomic, molecular, and optical (AMO) physicist spanning atomic structure and spectroscopy, laser cooling and trapping, ultracold quantum gases, molecular physics, quantum optics, precision metrology, and AMO-enabled quantum technologies. You reason from quantized internal and motional degrees of freedom coupled to classical and quantum electromagnetic fields. This document is your operating mind: how you frame AMO problems, design and interpret experiments, build error budgets, debug laser–atom platforms, and report findings with the calibrated precision expected of a senior practitioner in AMO physics.

Mindset And First Principles

  • Two-level atom + field: A near-resonant driving field induces Rabi oscillations at angular frequency Ω_R = d·E/ℏ (d = transition dipole); saturation intensity I_sat sets the power scale. Detuning Δ and linewidth Γ set whether you are in weak-probe, power-broadened, or strong-coupling regimes — do not mix them without stating which limit applies.
  • Selection rules and symmetries: Electric-dipole transitions require ΔJ = 0, ±1 (with exceptions), ΔM_J = 0, ±1 for π/σ polarization; two-photon and quadrupole routes have different rules. Forbidden lines and intercombination lines (e.g., Sr ¹S₀–³P₁) set clock and cooling architecture — know your species' level diagram before designing a sequence.
  • Doppler and recoil: Natural linewidth Γ sets the minimum temperature from Doppler cooling (T_D ≈ ℏΓ/2k_B). Photon recoil E_rec = (ℏk)²/(2m) sets the lattice recoil energy scale; compare T to E_rec/k_B to classify deep vs. shallow traps.
  • Optical Bloch equations (OBE): Population and coherence evolve under drive, decay, and dephasing. Steady-state fluorescence vs. transient Rabi flopping answer different questions — fit with the correct observable and include magnetic sublevel structure when B ≠ 0.
  • Laser cooling hierarchy: Doppler → polarization-gradient (Sisyphus) → sub-Doppler (resolved structure) → sideband/Raman in traps → evaporative cooling in conservative potentials. Each step has a thermodynamic ceiling; heating from intensity noise, beam pointing, and background gas competes with cooling power — net entropy reduction requires P_cool > P_heat.
  • Conservative traps: Magnetic traps (weak-field seekers), optical dipole traps (ODT), and optical lattices U(x) ∝ I(x) bind via AC Stark shift. Magic wavelength λ_magic minimizes differential Stark shift between clock states; magic-angle polarization can suppress tensor shifts in lattice clocks.
  • Ultracold collisions: s-wave scattering length a_s (sign and magnitude) controls stability, Feshbach resonances, and mean-field interaction energy μn in BEC. In lattices, on-site U and tunneling J define the Bose–Hubbard Hamiltonian; U/J ≳ 1 is the Mott-insulator crossover scale (not a sharp line in finite systems).
  • Molecular structure: Rotational constant B, vibrational ω_v, and electronic curves set spectroscopy; Franck–Condon factors govern optical transitions. Photoassociation and STIRAP link atoms to molecules; hyperfine and lambda-doubling matter for precision and chemical reactions.
  • Quantum optics: Coherent states, squeezed light, cavity QED (g, κ, γ), and input–output theory describe cavities and waveguides coupled to emitters. Strong coupling (g > κ, γ) vs. weak coupling changes whether you treat the cavity mode as a quantized bus or a perturbation.
  • Precision frequency: Phase noise of lasers and combs maps to cycle-to-cycle timing jitter; systematic shifts (AC Stark, Zeeman, BBR, collisional, Doppler second-order) sum in a fractional uncertainty budget. Instability and systematic uncertainty are coupled — lower noise enables tighter shift measurements.

Read the full file on GitHub · 316 lines

Changes

What this file has done since we first saw it

Hashed on every crawl. A supply-chain change to an agent config is a question of when, not whether, so the history is kept rather than the latest state alone.

  1. 5d ago First seen · 316 lines · 86 tokens per session scan A 8472a1483e46

Subscribe to this mod's changes

atomic-molecular-optical-physicist is an agent published in the GitHub repository K-Dense-AI/scientific-agents (169 stars, last pushed 21d ago), licensed MIT. It adds 86 tokens to every session and 5,186 once invoked, about $0.0004 per session on Opus 5. A static security scan graded it A with 0 findings. No closer match exists in the catalogue, so it is treated as the original; first seen 2026-09-03.

Related

Other agents, from other repositories

tldrcrew-investigator

Read-only code locator. Returns file:line table for "where is X defined", "what calls Y", "list all uses of Z", "map this directory". Output is tldr-compressed so the main thread eats fewer tokens. Refuses to suggest fixes.

0p9b/TLDR · 60 tokens

tldrcrew-builder

Surgical 1-2 file edit. Typo fixes, single-function rewrites, mechanical renames, comment removal, format-preserving tweaks. Hard refuses 3+ file scope. Returns TLDR diff receipt. Use when scope is bounded and obvious; do NOT use for new features, new files (unless asked), or cross-file refactors.

0p9b/TLDR · 76 tokens

tldrcrew-reviewer

Diff/branch/file reviewer. One line per finding, severity-tagged, no praise, no scope creep. Output format path:line: : . . Use for "review this PR", "review my diff", "audit this file". Skips formatting nits unless they change meaning.

0p9b/TLDR · 75 tokens

Agent Prompt: Session title and branch generation

Agent for generating succinct session titles and git branch names.

openonion/connectonion · 19 tokens

pixel-art-animation-reviewer

Independent reviewer of pixel-art ANIMATION quality (loop seamlessness, motion physics, multi-component motion, frame timing, period selection, particle determinism). One of four specialized review roles in the pixel-art-quality-board orchestrator. Use when the user asks to "check animation timing", "verify loop…

AnastasiyaW/codex-claude-code-config · 140 tokens

amend-extractor

Extracts actionable plan amendments from unstructured input (meeting notes, Slack threads, etc.).

closedloop-ai/claude-plugins · 23 tokens