453 tagged scientific, measured the same way as everything else here.
Browse within: bioinformatics 29academic-writing 27agents-md 26data-science 26data-analysis 23prompt-engineering 20codex-cli 19tidymodels 19bayesian-statistics 18clinical-trials 18Science 17agent-orchestration 16gemini 16meta-prompting 16
Agent
Metabolic flux analysis agent. Performs gene essentiality analysis, phenotypic phase plane construction, flux sampling, and subsystem-level pathway analysis. Use after FBA simulations are complete and the user wants deeper phenotypic characterisation or to identify metabolic engineering targets.
Agent Claude Code
Verify a feature isn't on the 4.0 kill list before anyone implements it. Use proactively before starting any new feature or restoring 3.x behavior.
0xNyk/council-of-high-intelligence
Agent
Council member. Use standalone for cognitive bias detection & decision science analysis, or via /council for multi-perspective deliberation.
Agent
Evaluate expectations against an execution transcript and output files. Grade evidence, not the executor's claims, and also identify weak expectations that could create false confidence.
Agent
Analyze blind comparison results to understand WHY the winner won and generate improvement suggestions.
Agent
Compare two outputs WITHOUT knowing which skill produced them.
Agent Claude Code
Use this agent when you need to systematically process tutorials to extract and implement their tools as reusable functions for current folder with ONLY -env environment installed (no mcps-env required). This agent should be triggered when: (1) You have discovered tutorials that need to be converted into a function…
Agent
Autonomous scientific research agent with access to 1000+ databases. Use for complex research questions that require searching multiple databases, analyzing data, and synthesizing findings.
Agent
Builds interactive HTML explorables for Engram threshold concepts under the binding Explorable Contract. Use after encoding a threshold node, or to re-encode a repeatedly-lapsing node visually.
Agent
Independent grader of learner productions for the Engram learning plugin. MUST BE USED for /learn verification and /review audits. Deliberately blind to the tutoring dialogue — receives only items and rubrics, returns receipt JSON.
Agent
Decomposes any topic into a first-principles concept DAG for the Engram learning plugin. Use when starting a new learning topic or restructuring one. Returns strict JSON for engram.py add-topic.
Agent
Autonomous Retrosynthetic Tree Search Loop. Continuously expands nodes, checks vendors via AI models, and backpropagates until the target is solved or interrupted.
Agent
Default writable implementation agent for bounded GPD research execution. Handles PLAN.md files or scoped tasks with checkpointing, deviation handling, state updates, and physics discipline. Spawned by execute-phase, quick, and parameter-sweep workflows.
Agent
Drafts and revises physics paper sections from research results with proper LaTeX, equations, and citations. Spawned by the write-paper and respond-to-referees workflows.
Agent
Investigates bugs using scientific method, manages debug sessions, handles checkpoints. Spawned by /gsd-debug orchestrator.
Agent
An agent that designs explanations using learning-science methods for beginners who need to understand and repeat the assigned topics in their own words.
AgentTeam-TaichuAI/ScienceClaw
Agent
Analyze blind comparison results to understand WHY the winner won and generate improvement suggestions.
AgentTeam-TaichuAI/ScienceClaw
Agent
Compare two outputs WITHOUT knowing which skill produced them.
Agent
Optional Sanhedrin fallback verifier. Decomposes a draft into check-worthy claims, checks high-trust durable Vestige evidence, and returns a pass/veto verdict.
Agent
Subconscious subagent that surfaces cross-disciplinary structural parallels from the Vestige memory graph. Invoked by the preflight-swarm.sh UserPromptSubmit hook (Pre-Cognitive Triad v2.3 "Thalamus"). Fresh context, Haiku 4.5, Vestige MCP tool access. Outputs a single XML block or EMPTY.
Agent
Optional decision helper that turns Vestige retrievals into concise recommendations. Use for high-stakes technical choices, launches, purchases, submissions, architecture decisions, and tradeoffs where memory evidence may change the answer.
Agent Claude Code
Senior architect agent for Kosmos codebase analysis. Generates WARMSTART.md documentation for AI programmers. Use for onboarding, architecture overview, refreshing documentation, or answering architecture questions.
Agent
Analysis expert in Single-Cell and Spatial Omics data analysis, with expertise in analyze data with python tools in scverse ecosystem and jupyter notebook. It's has the visual understanding ability can observe and understand the images.
Agent
Isolated extraction worker for clinical-note-extract batch runs. Reads one note from its prompt, returns one structured record. No tools — note text is untrusted input.