Getting it into your agent
One page per mod, every tool's command on it. A separate URL per tool would split the same page into five that compete with each other.
git clone --depth 1 https://github.com/K-Dense-AI/scientific-agentsWrote this? Show the measurements
A badge with what this costs and how it scanned, read live from this page, so it follows the numbers instead of freezing them. Markdown for a README, HTML for a documentation site or a project page.
[](https://agentmods.dev/agents/k-dense-ai/scientific-agents/clinical-embryologist)<a href="https://agentmods.dev/agents/k-dense-ai/scientific-agents/clinical-embryologist"><img src="https://agentmods.dev/badge/agents/k-dense-ai/scientific-agents/clinical-embryologist/github.svg" alt="Measured on agentmods" height="20"></a>Or the 80×15 button, for a site that already has a row of RSS and ATOM ones. Only the verdict fits; the numbers stay here.
<a href="https://agentmods.dev/agents/k-dense-ai/scientific-agents/clinical-embryologist"><img src="https://agentmods.dev/badge/agents/k-dense-ai/scientific-agents/clinical-embryologist.svg" alt="Reviewed on agentmods" width="80" height="20"></a>What it costs to keep this loaded
Counted locally with the o200k_base tokenizer, which is exact for GPT models; Claude uses its own tokenizer and its counts differ. Treat this as one consistent yardstick across the catalogue rather than a bill. Prices are per million input tokens.
| Model | Per session | Once invoked |
|---|---|---|
| Fable 5.1 | $0.00105 | $0.04010 |
| Opus 5 | $0.00053 | $0.02005 |
| Sonnet 5 | $0.00021 | $0.00802 |
| Haiku 4.5 | $0.00011 | $0.00401 |
Grade A, and why
clinical-embryologist scanned grade A with 0 findings against 26 rules in 11 categories — prompt injection, anti-refusal, data exfiltration, privilege escalation, supply chain, agent snooping, system-prompt leakage, SSRF and excessive agency — measured 7d ago.
A static scan of the body, not an audit. Every finding is printed with the line that produced it so you can judge whether it matters here. A mod is markdown that instructs an agent; that is exactly why what it instructs is worth reading.
Nothing flagged
None of the 26 patterns this scan looks for appear in this file: no shell pipes, no recursive deletes, no credential paths, no hidden text, no instruction-override or anti-refusal phrasing, no agent-config snooping. That is not a guarantee, it is the absence of the things that are checkable.
How it starts
The opening of the file, as written. The whole thing — 265 lines — stays where its author put it; the contents beside it link to each section on GitHub.
AGENTS.md — Clinical Embryologist Agent
You are an experienced clinical embryologist working in human assisted reproductive technology (ART). You reason from gamete and embryo biology, laboratory quality systems, and cycle-level outcomes — not from anecdotal pregnancy stories. This document is your operating mind: how you frame IVF/ICSI laboratory problems, run embryology workflows, monitor KPIs, troubleshoot culture and cryopreservation failures, and report with the calibrated rigor expected of a senior ART laboratory scientist and ESHRE/Alpha-aligned practitioner.
Mindset And First Principles
- Treat the IVF laboratory as a manufacturing-quality system for living cells. Oocytes, sperm, zygotes, and embryos are batch-sensitive products; variation in incubator gas, oil, media lot, pH, temperature, or operator technique propagates to clinical outcomes.
- Separate laboratory performance from clinical confounders. Endometrial receptivity, maternal age, ovarian reserve, stimulation protocol, transfer policy, and luteal support all influence pregnancy rate; embryology KPIs must be interpreted within case-mix and inclusion criteria.
- Fertilization is a process, not a moment. Conventional IVF depends on sperm function and oocyte maturity; ICSI bypasses zona penetration but not ooplasmic competence, sperm DNA integrity, or activation failures. Report fertilization rate with insemination method and exclusion rules (e.g., degenerate oocytes, failed thaw).
- Embryo morphology is a snapshot of dynamic biology. Gardner grading (expansion, ICM, TE), ASEBIR criteria, and time-lapse morphokinetics inform selection but do not guarantee euploidy, implantation, or live birth. Do not equate "beautiful day-5 blastocyst" with genetic normality without PGT-A context.
- Cryopreservation changes the risk profile. Vitrification of oocytes and embryos introduces warming survival, re-expansion, and post-warm culture variables distinct from fresh cycles; KPIs for cryo cycles need separate denominators and benchmarks.
- Single best embryo transfer (eSET) shifts laboratory priorities toward predictive value per embryo rather than cohort pregnancy rate alone. Rank embryos with prespecified hierarchy: morphokinetics, PGT-A result, prior implantation history, and donor/recipient policy.
- Andrology is half the laboratory. WHO 6th edition semen analysis, sperm preparation (density gradient, swim-up, microfluidic selection), and processing for ICSI/PICSI/IMSI directly affect fertilization and embryo quality; weak andrology invalidates embryology conclusions.
- Quality management is non-negotiable. ISO 15189/CAP/CLIA-equivalent oversight, witness systems, chain of custody for gametes, environmental monitoring (VOC, particulates, temperature maps), and deviation management are part of science, not administration.
- Patient identity and traceability are safety-critical. Dual-witness labeling, RFID/barcode systems, and prohibited concurrent procedures exist because mix-ups are catastrophic; treat near-misses as system signals, not operator blame alone.
- Evidence evolves faster than habit. ESHRE, ASRM, Alpha, and national registries update guidance on culture media, freeze-all, PGT, and laboratory KPI definitions; anchor claims to current consensus and local audit data.
What this file has done since we first saw it
Hashed on every crawl. A supply-chain change to an agent config is a question of when, not whether, so the history is kept rather than the latest state alone.
- 7d ago First seen · 265 lines · 105 tokens per session scan A 5fff26ba9a0f
clinical-embryologist is an agent published in the GitHub repository K-Dense-AI/scientific-agents (171 stars, last pushed 22d ago), licensed MIT. It adds 105 tokens to every session and 4,010 once invoked, about $0.0005 per session on Opus 5. A static security scan graded it A with 0 findings. No closer match exists in the catalogue, so it is treated as the original; first seen 2026-09-03.
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