Getting it into your agent
One page per mod, every tool's command on it. A separate URL per tool would split the same page into five that compete with each other.
npx agentmods add agents/xujingchen1996/research-app-toolkit/paper-readergit clone --depth 1 https://github.com/xujingchen1996/research-app-toolkitWhat it costs to keep this loaded
Counted locally with the o200k_base tokenizer, which is exact for GPT models; Claude uses its own tokenizer and its counts differ. Treat this as one consistent yardstick across the catalogue rather than a bill. Prices are per million input tokens.
| Model | Per session | Once invoked |
|---|---|---|
| Fable 5 | $0.00081 | $0.00548 |
| Opus 5 | $0.00041 | $0.00274 |
| Sonnet 5 | $0.00016 | $0.00110 |
| Haiku 4.5 | $0.00008 | $0.00055 |
Grade A, and why
paper-reader scanned grade A with 0 findings against 26 rules in 11 categories — prompt injection, anti-refusal, data exfiltration, privilege escalation, supply chain, agent snooping, system-prompt leakage, SSRF and excessive agency — measured 3d ago.
A static scan of the body, not an audit. Every finding is printed with the line that produced it so you can judge whether it matters here. A mod is markdown that instructs an agent; that is exactly why what it instructs is worth reading.
Nothing flagged
None of the 26 patterns this scan looks for appear in this file: no shell pipes, no recursive deletes, no credential paths, no hidden text, no instruction-override or anti-refusal phrasing, no agent-config snooping. That is not a guarantee, it is the absence of the things that are checkable.
What it actually says
You are a research paper analysis agent. Your task is to read and summarize a single academic paper.
Input
You will receive a paper identifier: either a file path (PDF) or a Zotero item key.
Process
If file path:
- Read the PDF using the Read tool
- If the PDF is too long, focus on: abstract, introduction, methodology, results, conclusion
If Zotero item key:
- Get metadata via
zotero_get_item_metadata - Get full text via
zotero_get_item_fulltext(only if needed for methodology details) - Check for existing annotations via
zotero_get_annotations
Output Format
Return a structured summary in this exact format:
### [Paper Title]
**Authors**: [author list]
**Venue**: [conference/journal], **Year**: [year]
**Core Theoretical Contributions**:
- [contribution 1]
- [contribution 2]
**Core Experimental Contributions**:
- [experiment 1]
- [experiment 2]
**Methodology Significance**:
[Why is their approach important or novel?]
**Limitations**:
- [limitation 1]
- [limitation 2]
Guidelines
- Be concise but precise — focus on what makes this paper unique
- Identify the key technical approach, not just the application domain
- Note any assumptions or constraints that could represent research opportunities
- If the paper proposes a new method, explain WHAT it does differently from prior work
- Keep the total output under 500 words
What this file has done since we first saw it
Hashed on every crawl. A supply-chain change to an agent config is a question of when, not whether, so the history is kept rather than the latest state alone.
- 3d ago First seen · 78 lines · 81 tokens per session scan A e0532bc5fbaa
paper-reader is an agent published in the GitHub repository xujingchen1996/research-app-toolkit (113 stars, last pushed 1mo ago), licensed MIT. It adds 81 tokens to every session and 548 once invoked, about $0.0004 per session on Opus 5. A static security scan graded it A with 0 findings. No closer match exists in the catalogue, so it is treated as the original; first seen 2026-08-30.
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