Getting it into your agent
One page per mod, every tool's command on it. A separate URL per tool would split the same page into five that compete with each other.
npx agentmods add commands/choxos/biostatagent/cse-analysisgit clone --depth 1 https://github.com/choxos/BiostatAgentWrote this? Show the measurements
A badge with what this costs and how it scanned, read live from this page, so it follows the numbers instead of freezing them. Markdown for a README, HTML for a documentation site or a project page.
[](https://agentmods.dev/commands/choxos/biostatagent/cse-analysis)<a href="https://agentmods.dev/commands/choxos/biostatagent/cse-analysis"><img src="https://agentmods.dev/badge/commands/choxos/biostatagent/cse-analysis.svg" alt="Measured on agentmods" height="20"></a>What it costs to keep this loaded
Counted locally with the o200k_base tokenizer, which is exact for GPT models; Claude uses its own tokenizer and its counts differ. Treat this as one consistent yardstick across the catalogue rather than a bill. Prices are per million input tokens.
| Model | Per session | Once invoked |
|---|---|---|
| Fable 5 | $0.00014 | $0.00956 |
| Opus 5 | $0.00007 | $0.00478 |
| Sonnet 5 | $0.00003 | $0.00191 |
| Haiku 4.5 | $0.00001 | $0.00096 |
Grade A, and why
cse-analysis scanned grade A with 0 findings against 26 rules in 11 categories — prompt injection, anti-refusal, data exfiltration, privilege escalation, supply chain, agent snooping, system-prompt leakage, SSRF and excessive agency — measured 4d ago.
A static scan of the body, not an audit. Every finding is printed with the line that produced it so you can judge whether it matters here. A mod is markdown that instructs an agent; that is exactly why what it instructs is worth reading.
Nothing flagged
None of the 26 patterns this scan looks for appear in this file: no shell pipes, no recursive deletes, no credential paths, no hidden text, no instruction-override or anti-refusal phrasing, no agent-config snooping. That is not a guarantee, it is the absence of the things that are checkable.
How it starts
The opening of the file, as written. The whole thing — 140 lines — stays where its author put it; the contents beside it link to each section on GitHub.
Clinical Scenario Evaluation Workflow
Overview
Comprehensive Clinical Scenario Evaluation (CSE) using the Mediana package to evaluate trial designs across multiple scenarios, analysis strategies, and success criteria.
Workflow Phases
Phase 1: Data Model Construction
Phase 2: Analysis Model Construction
Phase 3: Evaluation Model
Phase 4: Simulation Execution
What this file has done since we first saw it
Hashed on every crawl. A supply-chain change to an agent config is a question of when, not whether, so the history is kept rather than the latest state alone.
- 4d ago First seen · 140 lines · 14 tokens per session scan A a0eb8609a09f
cse-analysis is a command published in the GitHub repository choxos/BiostatAgent (11 stars, last pushed 3mo ago), licensed MIT. It adds 14 tokens to every session and 956 once invoked, about $0.0001 per session on Opus 5. A static security scan graded it A with 0 findings. No closer match exists in the catalogue, so it is treated as the original; first seen 2026-08-30.
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render-figures
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arg-diagram
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graphiti-verify
Run Day 1 verification sequence to confirm environment is working.