research-log

research-log is a command for Claude Code from KhaledSaeed18/dotclaude. It costs 81 tokens per session (642 once invoked), scanned A, original, MIT.

A command for adding a dated entry to a thesis research log. It gathers recent notes, Git history, working-tree changes, and conversation context, then records what was read, done, decided, and planned next.

In plain words
What is it for?
It helps maintain RESEARCH_LOG.md, add the day's reading and development activity, record decisions, and preserve the student's supplied summary.
Why use it?
It prevents progress from having to be reconstructed from memory before a supervisor meeting. It also keeps research decisions and unfinished work in one chronological file.

Command for Claude Code

Written for Claude Code: allowed-tools in frontmatter. Also seen: model in frontmatter.

Part of the thesis plugin — 21 skills, 3 commands, 2 agents shipped together

Good fit It helps maintain RESEARCH_LOG.md, add the day's reading and development activity, record decisions, and preserve the student's supplied summary.

Compare 6 commands from other repositories ↓
Install with agentmods
npx agentmods add commands/khaledsaeed18/dotclaude/research-log
Install

Getting it into your agent

One page per mod, every tool's command on it. A separate URL per tool would split the same page into five that compete with each other.

Clone the repo
git clone --depth 1 https://github.com/KhaledSaeed18/dotclaude

Made for: Claude Code.

Or install thesis, the plugin that ships this one along with the rest of its 21 skills, 3 commands, 2 agents.

Wrote this? Show the measurements

A badge with what this costs and how it scanned, read live from this page, so it follows the numbers instead of freezing them. Markdown for a README, HTML for a documentation site or a project page.

agentmods badge for research-log

README.md
[![agentmods](https://agentmods.dev/badge/commands/khaledsaeed18/dotclaude/research-log/github.svg)](https://agentmods.dev/commands/khaledsaeed18/dotclaude/research-log)
Your own site
<a href="https://agentmods.dev/commands/khaledsaeed18/dotclaude/research-log"><img src="https://agentmods.dev/badge/commands/khaledsaeed18/dotclaude/research-log/github.svg" alt="Measured on agentmods" height="20"></a>

Or the 80×15 button, for a site that already has a row of RSS and ATOM ones. Only the verdict fits; the numbers stay here.

agentmods 80×15 button for research-log

Your own site · 80×15
<a href="https://agentmods.dev/commands/khaledsaeed18/dotclaude/research-log"><img src="https://agentmods.dev/badge/commands/khaledsaeed18/dotclaude/research-log.svg" alt="Reviewed on agentmods" width="80" height="20"></a>
Per session 81 Only the description is in the session, so the agent can decide to use it. The body loads when it is invoked.
When invoked 642 The whole file, excluding the scripts and references it only reads on demand.
Security scan A 0 findings. A grade says what 26 rules found in the file — not that it is safe.
Origin original No closer match found in the catalogue.
Token cost

What it costs to keep this loaded

Counted locally with the o200k_base tokenizer, which is exact for GPT models; Claude uses its own tokenizer and its counts differ. Treat this as one consistent yardstick across the catalogue rather than a bill. Prices are per million input tokens.

ModelPer sessionOnce invoked
Fable 5.1 $0.00081 $0.00642
Opus 5.5 $0.00032 $0.00257
Sonnet 5.5 $0.00016 $0.00128
Haiku 4.5 $0.00008 $0.00064

Measured 25d ago against content hash 324d937687f1, method: parsed. Prices are Anthropic first-party input rates as of 2026-10-07, from the pricing page.

Security

Grade A, and why

research-log scanned grade A with 0 findings against 26 rules in 11 categories — prompt injection, anti-refusal, data exfiltration, privilege escalation, supply chain, agent snooping, system-prompt leakage, SSRF and excessive agency — measured 25d ago.

A static scan of the body, not an audit. Every finding is printed with the line that produced it so you can judge whether it matters here. A mod is markdown that instructs an agent; that is exactly why what it instructs is worth reading.

Nothing flagged

None of the 26 patterns this scan looks for appear in this file: no shell pipes, no recursive deletes, no credential paths, no hidden text, no instruction-override or anti-refusal phrasing, no agent-config snooping. That is not a guarantee, it is the absence of the things that are checkable.

.claude-plugin/plugins/thesis/commands/research-log.md · 63 lines

What it actually says

Context

Today: !date +%Y-%m-%d

Notes added or changed in the last 7 days:

!find research/notes -name '*.md' -mtime -7 2>/dev/null | sort || echo "(no research/notes directory)"

Commits in the last 7 days:

!git log --since='7 days ago' --format=' %ad %s' --date=short 2>/dev/null || echo "(not a git repository)"

Working tree:

!git status --short 2>/dev/null | head -20

Last log entry:

!awk '/^## /{n++} n==1' RESEARCH_LOG.md 2>/dev/null | head -40 || echo "(no RESEARCH_LOG.md yet)"

Task

Append one entry to RESEARCH_LOG.md (create it with a # Research log heading if absent). Entries are newest-first, so insert after the title, before the previous entry.

Arguments, if any: $ARGUMENTS. Treat them as the student's own summary and fold them in verbatim under the right headings; do not rephrase their words.

Entry format

## 2026-09-21

### Read
- smith2023feedback: one line on what it contributed to the thesis (from the note's "Relation to this thesis").

### Did
- What was built, run, analysed, or written, with paths or commit hashes.

### Decided
- Decisions made, each with the reason and what it rules out. Link to research/QUESTION.md or a note where relevant.

### Open
- Questions for the supervisor, blockers, things that need data or approval.

### Next
- The two or three concrete next actions.

Rules

  • Every bullet must be traceable: a note file, a commit, a path, or something the student said in this session. Do not infer activity from silence.
  • Omit a heading with nothing under it rather than writing "nothing".
  • Keep "Decided" honest: a decision reversed later is recorded as a new decision, not edited out.
  • If the "Open" list has items older than two entries, say so in the reply; those need a supervisor.
  • After writing, print the new entry and the count of entries in the log.
Changes

What this file has done since we first saw it

Hashed on every crawl. A supply-chain change to an agent config is a question of when, not whether, so the history is kept rather than the latest state alone.

  1. 25d ago First seen · 63 lines · 81 tokens per session scan A 324d937687f1

Subscribe to this mod's changes

research-log is a command published in the GitHub repository KhaledSaeed18/dotclaude (5 stars, last pushed 2d ago), licensed MIT. It adds 81 tokens to every session and 642 once invoked, about $0.0003 per session on Opus 5.5. A static security scan graded it A with 0 findings. No closer match exists in the catalogue, so it is treated as the original; first seen 2026-09-22.