agentmods.dev

thesis

thesis is a plugin for Claude Code from KhaledSaeed18/dotclaude. Its manifest loads nothing; the 21 skills, 3 commands, 2 agents it bundles cost 2,629 tokens per session together, scanned A, original, MIT.

A research workflow for a master's thesis or academic paper. It covers finding and organising sources, checking citations, planning studies and statistics, writing sections, preparing figures, and reviewing the final work.

In plain words
What is it for?
It helps with proposals, literature searches, BibTeX bibliographies, systematic reviews, citation graphs, experiments, benchmarks, academic writing, LaTeX or Word, proofreading, and progress tracking.
Why use it?
It helps reduce unsupported citations, disorganised literature reviews, irreproducible experiments, and gaps in the process from research question to finished paper.

Plugin for Claude Code

Written for Claude Code: a Claude Code plugin manifest. Also seen: mentions .claude-plugin.

not rated 5repo 2d ago A scan tokens not measured original MIT

Good fit It helps with proposals, literature searches, BibTeX bibliographies, systematic reviews, citation graphs, experiments, benchmarks, academic writing, LaTeX or Word, proofreading, and progress tracking.

Compare 6 plugins from other repositories ↓
Install in Claude Code
/plugin marketplace add KhaledSaeed18/dotclaude
/plugin install thesis
View source ↗ KhaledSaeed18/dotclaude dotclaude.khaledsaeed.tech
Install

Getting it into your agent

One page per mod, every tool's command on it. A separate URL per tool would split the same page into five that compete with each other.

Clone the repo
git clone --depth 1 https://github.com/KhaledSaeed18/dotclaude

Made for: Claude Code.

Wrote this? Show the measurements

A badge with what this costs and how it scanned, read live from this page, so it follows the numbers instead of freezing them. Markdown for a README, HTML for a documentation site or a project page.

agentmods badge for thesis

README.md
[![agentmods](https://agentmods.dev/badge/plugins/khaledsaeed18/dotclaude/thesis/github.svg)](https://agentmods.dev/plugins/khaledsaeed18/dotclaude/thesis)
Your own site
<a href="https://agentmods.dev/plugins/khaledsaeed18/dotclaude/thesis"><img src="https://agentmods.dev/badge/plugins/khaledsaeed18/dotclaude/thesis/github.svg" alt="Measured on agentmods" height="20"></a>

Or the 80×15 button, for a site that already has a row of RSS and ATOM ones. Only the verdict fits; the numbers stay here.

agentmods 80×15 button for thesis

Your own site · 80×15
<a href="https://agentmods.dev/plugins/khaledsaeed18/dotclaude/thesis"><img src="https://agentmods.dev/badge/plugins/khaledsaeed18/dotclaude/thesis.svg" alt="Reviewed on agentmods" width="80" height="20"></a>
Per session not measured What this adds to a session before it is invoked.
When invoked not measured The manifest loads nothing itself; its 21 skills, 3 commands, 2 agents cost 2,629 tokens a session between them.
Security scan A 0 findings. A grade says what 26 rules found in the file — not that it is safe.
Origin original No closer match found in the catalogue.
Security

Grade A, and why

thesis scanned grade A with 0 findings against 26 rules in 11 categories — prompt injection, anti-refusal, data exfiltration, privilege escalation, supply chain, agent snooping, system-prompt leakage, SSRF and excessive agency — measured 25d ago.

The scan reads marketplace.json#thesis. This mod also ships 10 executable files (plugins/deploy/skills/express-prisma-coolify-image/templates/docker-entrypoint.sh, plugins/deploy/skills/express-prisma-coolify-image/templates/healthcheck.ts, plugins/deploy/skills/nextjs-coolify-image/templates/healthcheck.js, …), listed below but not scanned — reading those needs a real analyzer, not pattern matching.

A static scan of the body, not an audit. Every finding is printed with the line that produced it so you can judge whether it matters here. A mod is markdown that instructs an agent; that is exactly why what it instructs is worth reading.

Nothing flagged

None of the 26 patterns this scan looks for appear in this file: no shell pipes, no recursive deletes, no credential paths, no hidden text, no instruction-override or anti-refusal phrasing, no agent-config snooping. That is not a guarantee, it is the absence of the things that are checkable.

.claude-plugin/marketplace.json#thesis · 21 lines

What it actually says

{
  "name": "thesis",
  "version": "1.0.0",
  "source": "./.claude-plugin/plugins/thesis",
  "description": "The research lifecycle for a master's thesis or paper: research question and proposal, multi-source literature search, structured paper notes, a verified BibTeX bibliography, citation verification with a hook that catches invented keys as they are written, argument-first literature synthesis, research design and design science, statistics planning and reporting, PRISMA systematic reviews, citation-graph expansion, reproducible experiments and benchmark reporting, section-by-section academic writing, LaTeX and Word toolchains, publication figures, an examiner-style reviewer and a paper critic, proofreading, supervisor updates, a research log, and progress tracking.",
  "author": {
    "name": "Khaled Saeed"
  },
  "homepage": "https://dotclaude.khaledsaeed.tech/#/?plugin=thesis",
  "repository": "https://github.com/KhaledSaeed18/dotclaude",
  "license": "MIT",
  "category": "research",
  "keywords": [
    "thesis",
    "research",
    "literature-review",
    "citations",
    "bibtex",
    "academic"
  ]
}
Contents

What it installs

The manifest is a name and a version. 21 skills, 3 commands, 2 agents travel with it, and installing the plugin installs all of them — 2,629 tokens a session between them. Each is measured on its own page, and each can be installed alone.

Files

What ships with it

60 files beside marketplace.json#thesis in the same directory: the scripts, references and assets a skill reads on demand. Not counted in the per-session cost; read them before you install if any of them is executable.

Changes

What this file has done since we first saw it

Hashed on every crawl. A supply-chain change to an agent config is a question of when, not whether, so the history is kept rather than the latest state alone.

  1. 25d ago First seen · 21 lines scan A a57d33fb6e53

Subscribe to this mod's changes

thesis is a plugin published in the GitHub repository KhaledSaeed18/dotclaude (5 stars, last pushed 2d ago), licensed MIT. Its token cost is not measured: this kind of file is read by the harness, not the model. A static security scan graded it A with 0 findings. No closer match exists in the catalogue, so it is treated as the original; first seen 2026-09-22.

Claude CodeResearchScientificagentic-toolsai-agentsanthropicclaudeclaude-skills
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