Scientific plugins

578 tagged Scientific, measured the same way as everything else here.

Browse within: LLM 118prompt-engineering 104agentic-ai 102Science 97agents-md 97claude-code-plugin 34bioinformatics 32mcp-server 31academic-writing 24codex-plugin 22github-copilot 21matlab 21ai-tools 18matlab-mcp-server 18

trailofbits/skills

Plugin Claude Code

Bundles 1 skill, 5 agents · 194 tokens together

Audits code for unit and decimal-scaling bugs and annotates it with dimensional comments recording the units of each value. Use when someone asks to audit or review code for unit confusion, decimals or scaling mismatches, WAD/RAY scale errors, or the wrong token's decimals; to annotate units in a codebase; or to…

not rated 7.6k +139 changed 3d ago A tokens not measured CC-BY-SA-4.0

openmed-skills

02

maziyarpanahi/openmed

Plugin Claude Code

Bundles 74 skills · 11,398 tokens together

De-identify PHI, run clinical NER, export FHIR, evaluate with leakage gates, and the healthcare workflows around them.

not rated 5.7k +123 today A tokens not measured original Apache-2.0

radiology-skills

04

huang-sir1/radiology-skills

Plugin Claude Code

Bundles 40 skills · 1,147 tokens together

A collection of 40 skills for radiology research, covering study planning, project operations, image measurement, analysis, evidence synthesis, health economics, communication, grant and slide preparation, and manuscript review.

not rated 2.0k +43 27d ago A tokens not measured

tooluniverse

05

mims-harvard/ToolUniverse

Plugin Claude Code

Bundles 162 skills, 8 commands, 1 agent, 1 hook, 1 MCP server · 18,140 tokens together

1000+ scientific research tools for biology, chemistry, medicine, and data science. Access PubMed, UniProt, PubChem, TCGA, NHANES, GWAS Catalog, and hundreds more databases through a unified MCP interface. Includes 120+ specialized research skills for genomics, drug discovery, clinical analysis, protein variant…

not rated 1.7k +18 changed 6d ago A tokens not measured original Apache-2.0

mirobody

06

thetahealth/mirobody

Plugin Claude Code

Bundles 2 skills · 267 tokens together

Translate raw health data into LOINC/UCUM/ICPC-3 coded rows and read lab reports against an offline resolver; self-host Mirobody and connect an agent over MCP.

not rated 1.4k +9 2d ago A tokens not measured original Apache-2.0

brycewang-stanford/Awesome-Journal-Skills

Plugin Claude Code

Bundles 12 skills · 0 tokens together

Agent skill stack for manuscripts targeted at the American Economic Journal: Economic Policy (AEJ: Policy) — the American Economic Association's quarterly journal for economic analysis OF policy, spanning public economics and taxation, environmental and energy, health, education, labor and social insurance, regulation.

not rated 1.3k +30 changed 22d ago A tokens not measured original MIT

paperjury

09

Spark-To-Paper-Skills/paperjury

Plugin Claude Code

Bundles 1 skill · 263 tokens together

Pre-submission AI review and editing for CS-conference papers: direct-edit LaTeX or Markdown (Word via one-time extraction), run an adversarial multi-agent courtroom review with consensus-gated revisions, or run it unattended toward a goal.

not rated 1.2k +2 2mo ago A tokens not measured original MIT

ai-and-statistics

10

matlab/matlab-agentic-toolkit

Plugin Claude Code

Bundles 10 skills · 1,238 tokens together

Curve Fitting Toolbox, Deep Learning Toolbox, Embedded Coder, Fixed-Point Designer, MATLAB Coder, MATLAB Compiler SDK, MATLAB Report Generator, Optimization Toolbox, Parallel Computing Toolbox, Statistics and Machine Learning Toolbox, Deep Learning Toolbox Converter for ONNX Model Format, Deep Learning Toolbox…

not rated 1.2k +27 changed 9d ago A tokens not measured

clawbio

11

ClawBio/ClawBio

Plugin Claude Code

Bundles 110 skills, 4 commands · 5,565 tokens together

Bioinformatics-native AI agent skill library: pharmacogenomics, clinical variant interpretation, GWAS and polygenic scores, ancestry, RNA-seq and single-cell, metagenomics, proteomics and nf-core pipeline wrappers. 100+ Agent Skills, many with a deterministic CLI entry point and demo data, every runnable skill writing.

not rated 1.2k +4 changed 4d ago A tokens not measured

nvidia-cuopt-skills

12

NVIDIA/cuopt

Plugin Cursor ✓ vendor

Bundles 9 skills · 366 tokens together

Agent skills for NVIDIA cuOpt: routing (VRP, TSP, PDP), LP/MILP/QP, installation (Python/C/developer), and REST server. Use when building or solving optimization with cuOpt.

not rated 1.1k +6 changed 3d ago A tokens not measured original Apache-2.0

biomcp

14

genomoncology/biomcp

Plugin Claude Code

Bundles 2 skills · 106 tokens together

Biomedical search and evidence retrieval MCP server.

not rated 658 +4 today A tokens not measured original MIT

NVIDIA-BioNeMo/bionemo-agent-toolkit

Plugin Claude Code

Bundles 2 skills · 276 tokens together

NVIDIA BioNeMo agent skills for life sciences — protein folding, molecular docking, generative chemistry, genomics, protein design, and biomarker discovery as ready-to-call tools.

not rated 484 +4 2d ago A tokens not measured

neuroarxiv

17

UditAkhourii/neuroarxiv

Plugin Claude Code

Bundles 1 skill · 162 tokens together

Grounds a coding agent's architecture decisions in real arXiv prior art: parallel isolated reads of papers found category-wise (divergence), converged into one recommended path with citations, a first step, and known failure modes to avoid.

not rated 436 +2 1mo ago A tokens not measured original MIT

geotessera

18

ucam-eo/geotessera

Plugin Claude Code

Bundles 1 skill · 61 tokens together

Teach coding agents to read Tessera satellite embeddings via the geotessera zarr interface.

not rated 358 +2 changed 13d ago A tokens not measured original MIT

medsci-modeling

20

Aperivue/medsci-skills

Plugin Claude Code

Bundles 15 skills · 595 tokens together

Clinical AI model research engineering: choose a paper-grounded architecture, scaffold a reproducible PyTorch training repo, validate the model's split and validation design, document it (Model Card / Datasheet), and evaluate models or LLMs/MLLMs on clinical tasks. Integrates MONAI / nnU-Net, never replaces them.

not rated 342 +8 changed 17d ago A tokens not measured original MIT

wp-a/nature-academic-search

Plugin Claude Code

Bundles 1 MCP server

Academic Paper Search for Codex, Claude Code, and DeepSeek Harness across CrossRef, PubMed, arXiv, OpenAlex, Europe PMC, Semantic Scholar, and ClinicalTrials.gov, with bounded citation graphs, auditable research workflows, and optional WPIRONMAN AI relay model access at https://api.wpironman.top; the relay is not a…

not rated 326 +14 changed 1mo ago A tokens not measured original MIT

thermite

22

raygon-renderer/thermite

Plugin Claude Code

Bundles 1 skill · 195 tokens together

Usage guide for the Thermite generic ISA-portable SIMD library and its companion crates (special functions, autodiff Dual, Compensated double-double, SDF, geometry, FFI). Write functions once over the GenericVector/FloatVector trait hierarchy and run them on any backend or composite vector type.

not rated 318 1mo ago A tokens not measured original Apache-2.0

spmind

24

tomtommyyuan/spmind

Plugin Claude Code

Bundles 1 MCP server

Spatial proteomics analysis tools (illumination correction, registration, TMA dearraying, segmentation, quantification, clustering) exposed as MCP tools.

not rated 280 +1 13d ago A tokens not measured original Apache-2.0

At most 3 mods per repository are shown here, and a mod shipped inside a plugin is left to that plugin's page — the rest are on their repository pages: