brycewang-stanford/Auto-Empirical-Research-Skills
Plugin Claude Code
First-party, install-ready Claude Code plugins from the Auto-Empirical-Research-Skills collection (Stanford REAP x CoPaper.AI). Add this marketplace to one-command-install the empirical-research skill stacks (AER manuscript pipeline + explicit Python / Stata / R analysis pipelines); the wider catalog of 50+…
brycewang-stanford/Auto-Empirical-Research-Skills
Skill Codex
Route empirical-research requests through the Auto-Empirical Research Skills catalog when this whole repository is installed as one skill in Codex, CodeBuddy, Claude Code, or another IDE. Use to choose and load the right vendored AERS skill for causal inference, econometrics, replication, data acquisition, manuscript…
brycewang-stanford/Auto-Empirical-Research-Skills
Skill Claude CodeCodex
Use when the user asks to run a full empirical / causal analysis in Python — by default in the style of an applied economics paper (AER / QJE / JPE / ReStud / AEJ) with DID / RD / IV / SCM / DML / matching, written-out estimating equation + identifying assumption, Table 1 / Table 2 / event-study figure / robustness…
brycewang-stanford/Auto-Empirical-Research-Skills
Skill Claude CodeCodex
Classical end-to-end empirical analysis workflow in the traditional Python econometric stack — pandas + numpy + scipy + statsmodels + linearmodels + pyfixest + rdrobust + econml + causalml + matplotlib/seaborn. Defaults to economics empirical-paper style (AER / QJE / AEJ) — every run produces a publication-ready…
brycewang-stanford/Auto-Empirical-Research-Skills
Skill Claude CodeCodex
Classical end-to-end empirical analysis workflow in the traditional Stata ecosystem — native Stata + reghdfe + ivreg2 + csdid + didimputation + eventstudyinteract + sdid + rdrobust + rddensity + synth + synthrunner + psmatch2 + teffects + ebalance + coefplot + esttab + asdoc + binscatter. Defaults to economics…
brycewang-stanford/Auto-Empirical-Research-Skills
Skill Claude CodeCodex
Classical end-to-end empirical analysis workflow in the modern tidyverse + econometrics R ecosystem — dplyr + tidyr + haven + fixest + sandwich + lmtest + clubSandwich + AER + ivreg + did + bacondecomp + HonestDiD + eventstudyr + rdrobust + rddensity + Synth + gsynth + synthdid + MatchIt + WeightIt + cobalt + ebal +…
brycewang-stanford/Auto-Empirical-Research-Skills
Skill Claude CodeCodex
Systematic writing framework for philosophy and interdisciplinary academic papers from optimized outline to submission-ready manuscript. Use when users want to: (1) write a paper from a detailed outline, (2) ensure quality control during writing, (3) maintain consistency across chapters, (4) prepare a submission-ready…
brycewang-stanford/Auto-Empirical-Research-Skills
Skill Claude CodeCodex
Systematic strategic planning framework for philosophy and interdisciplinary academic papers targeting preprint platforms (PhilArchive, arXiv, PhilSci-Archive). Use when users want to: (1) plan a paper on a specific topic, (2) identify research gaps and assess originality, (3) develop optimized paper outlines, (4)…
brycewang-stanford/Auto-Empirical-Research-Skills
Skill Claude Code
Write comprehensive literature reviews for medical imaging AI research. Use when writing survey papers, systematic reviews, or literature analyses on topics like segmentation, detection, classification in CT, MRI, X-ray, ultrasound, or pathology imaging. Triggers on requests for "review paper", "survey", "literature…
brycewang-stanford/Auto-Empirical-Research-Skills
Skill Claude CodeCodex
Generate professional slide deck images from academic papers and content. Creates comprehensive outlines with style instructions, auto-detects figures from PDFs, then generates individual slide images. Use when user asks to "create slides", "make a presentation", "generate deck", or "slide deck" for papers.
brycewang-stanford/Auto-Empirical-Research-Skills
Skill Claude Code
A guide for creating academic research proposals for PhD applications. A research proposal explains the question, plan, and expected contribution of a future research project.
brycewang-stanford/Auto-Empirical-Research-Skills
Skill Claude Code
Structured hypothesis formulation from observations. Use when you have experimental observations or data and need to formulate testable hypotheses with predictions, propose mechanisms, and design experiments to test them. Follows scientific method framework. For open-ended ideation use scientific-brainstorming; for…
brycewang-stanford/Auto-Empirical-Research-Skills
Skill Claude Code
Conduct comprehensive, systematic literature reviews using multiple academic databases (PubMed, arXiv, bioRxiv, Semantic Scholar, etc.). This skill should be used when conducting systematic literature reviews, meta-analyses, research synthesis, or comprehensive literature searches across biomedical, scientific, and…
brycewang-stanford/Auto-Empirical-Research-Skills
Skill Claude Code
Write competitive research proposals for NSF, NIH, DOE, DARPA, and Taiwan NSTC. Agency-specific formatting, review criteria, budget preparation, broader impacts, significance statements, innovation narratives, and compliance with submission requirements.
brycewang-stanford/Auto-Empirical-Research-Skills
Skill Claude Code
Core skill for the deep research and writing tool. Write scientific manuscripts in full paragraphs (never bullet points). Use two-stage process with (1) section outlines with key points using research-lookup then (2) convert to flowing prose. IMRAD structure, citations (APA/AMA/Vancouver), figures/tables, reporting…
brycewang-stanford/Auto-Empirical-Research-Skills
Skill Claude Code
Comprehensive citation management for academic research. Search Google Scholar and PubMed for papers, extract accurate metadata, validate citations, and generate properly formatted BibTeX entries. This skill should be used when you need to find papers, verify citation information, convert DOIs to BibTeX, or ensure…
brycewang-stanford/Auto-Empirical-Research-Skills
Skill Claude Code
Systematic peer review toolkit. Evaluate methodology, statistics, design, reproducibility, ethics, figure integrity, reporting standards, for manuscript and grant review across disciplines.
brycewang-stanford/Auto-Empirical-Research-Skills
Skill Claude Code
Apply the ScholarEval framework to systematically evaluate scholarly work across quality dimensions (novelty, rigor, significance, and clarity). Use to critique academic papers, research proposals, literature reviews, or grant applications and produce a structured, criterion-based assessment.
brycewang-stanford/Auto-Empirical-Research-Skills
Skill Claude Code
Evaluate research rigor. Assess methodology, experimental design, statistical validity, biases, confounding, evidence quality (GRADE, Cochrane ROB), for critical analysis of scientific claims.
brycewang-stanford/Auto-Empirical-Research-Skills
Skill Claude Code
Introduction to literature search & review skills - systematic paper finding, screening, extraction, and citation traversal.
brycewang-stanford/Auto-Empirical-Research-Skills
Skill Claude Code
Main orchestration workflow for systematic literature research - search, evaluate, traverse, synthesize.
brycewang-stanford/Auto-Empirical-Research-Skills
Skill Claude Code
Collaboratively build and refine paper screening rubrics through brainstorming, test-driven development, and iterative feedback.
brycewang-stanford/Auto-Empirical-Research-Skills
Skill Claude Code
Check if medicinal chemistry papers are in ChEMBL database to access curated bioactivity data.
brycewang-stanford/Auto-Empirical-Research-Skills
Skill Claude Code
Safely remove intermediate files from completed research sessions while preserving important data.
At most 3 mods per repository are shown here, and a mod shipped inside a plugin is left to that plugin's page — the rest are on their repository pages: