bioinformatics plugins

ClawBio/ClawBio

Plugin Claude Code

Bundles 110 skills, 4 commands · 5,565 tokens together

Bioinformatics-native AI agent skill library: pharmacogenomics, clinical variant interpretation, GWAS and polygenic scores, ancestry, RNA-seq and single-cell, metagenomics, proteomics and nf-core pipeline wrappers. 100+ Agent Skills, many with a deterministic CLI entry point and demo data, every runnable skill writing.

genomoncology/biomcp

Plugin Claude Code

Bundles 2 skills · 106 tokens together

Biomedical search and evidence retrieval MCP server.

jaechang-hits/SciAgent-Skills

Plugin Claude Code

Lists 1 plugin

Plugin marketplace listing 1 plugin: sciagent-skills.

tomtommyyuan/spmind

Plugin Claude Code

Bundles 1 MCP server

Spatial proteomics analysis tools (illumination correction, registration, TMA dearraying, segmentation, quantification, clustering) exposed as MCP tools.

AlterLab-IEU/AlterLab-Academic-Skills

Plugin Claude Code

Lists 2 plugins

239 Claude skills for academic research, organized by domain.

nextflow-io/agent-skills

Plugin Claude Code

Bundles 5 skills, 1 command, 1 MCP server · 273 tokens together

Skills for building and running Nextflow pipelines with modules from the Nextflow Registry (nf-core and more).

pascalwhoop/medical-mcps

Plugin Claude Code

Bundles 2 skills, 2 MCP servers · 197 tokens together

Comprehensive biological and medical research data integration server providing unified access to 13+ specialized databases including Reactome (pathways), KEGG (pathways/diseases), UniProt (proteins), ChEMBL (drug discovery), PubMed (literature), GWAS Catalog (genetic associations), ClinicalTrials.gov (clinical…

ammawla/encode-toolkit

Plugin Claude Code

Bundles 10 commands, 7 agents, 1 plugin · 402 tokens together

20 ENCODE API tools + 47 expert skills for genomics research. Search experiments, download files with MD5 verification, run pipelines, and cross-reference 14 databases.

HolobiomicsLab/asb-skill-collections

Plugin Claude Code

Curated, evidence-grounded scientific-agent skill and tool collections from the AgenticScienceBuilder pipeline.

BioSymphony/structure-factory

Plugin Claude Code

Bundles 2 skills · 75 tokens together

BioSymphony Structure Factory skills for public-safe structural biology campaign planning.

dekan-aleksandr/biodiscovery-skills

Plugin Claude Code

Bundles 2 skills · 236 tokens together

Thinking tools for AI agents making discoveries in the life sciences. A research-director operating stance plus 90 routed discovery operators.

jvogan/proteus

Plugin Claude Code

Bundles 1 skill · 169 tokens together

Proteus skills for public-safe structural biology automation and molecular visualization workflows.

cyanheads/pubchem-mcp-server

Plugin Claude Code

Bundles 33 skills, 1 MCP server · 2,497 tokens together

Search the PubChem chemical database for compounds, properties, safety data, bioactivity, cross-references, and entity summaries via MCP. STDIO or Streamable HTTP.

fmschulz/omics-skills

Plugin Claude Code

Bundles 34 skills, 4 agents · 1,570 tokens together

Bioinformatics, literature discovery, scientific writing, and data visualization agents and skills for Claude Code and Cowork.

Pavel-Kravchenko/Bioinformatics

Plugin Claude Code

218 bioinformatics skills for Claude Code — sequence analysis, NGS pipelines, single-cell, metagenomics, structural biology, cheminformatics, algorithms, mathematics & physics foundations, and AI for science.

Kdevos12/ALKYL

Plugin Claude Code

Bundles 27 skills · 1,690 tokens together

Computational chemistry and drug discovery plugin for Claude Code — RDKit, docking, MD, QM, FEP, generative design, and 23 domain skills.

cyanheads/protein-mcp-server

Plugin Claude Code

Bundles 33 skills, 1 MCP server · 2,497 tokens together

Federated protein structure & annotation across experimental (PDB) and predicted (AlphaFold) models.

Kayunangka/claude-skill

Plugin Claude Code

Bundles 1 skill · 80 tokens together

Guide for writing ast-grep rules to perform structural code search and analysis. Use when users need to search codebases using Abstract Syntax Tree (AST) patterns, find specific code structures, or perform complex code queries that go beyond simple text search.

HERRY423/CellTypePilot

Plugin Claude Code

Bundles 1 skill, 4 commands, 1 hook, 3 MCP servers · 210 tokens together

Single-cell annotation review plugin — governed context, independent state evidence, conservative abstention, and critic checks.

BioSymphony/cryocore

Plugin Claude Code

Bundles 7 skills · 263 tokens together

BioSymphony CryoCore skills for public-safe cryo-EM workflow planning, validation, and closeout.

cyanheads/brapi-mcp-server

Plugin Claude Code

Bundles 33 skills, 1 MCP server · 2,508 tokens together

A collaborative BrAPI v2.1 workspace for multi-agent research via MCP. Search studies, germplasm, genotypes, & more - across Breedbase, T3, Sweetpotatobase, & any BrAPI v2-compliant server.

CrossRead/scholion

Plugin Claude Code

Bundles 1 skill, 1 MCP server · 209 tokens together

Local second-opinion support for individuals and clinicians — genome (VCF), laboratory history, prescriptions and wearables. One person per container and per assistant conversation; the tools use the active container and cannot switch it. Findings carry their evidence level; lower-evidence findings reach the assistant.

cyanheads/ensembl-mcp-server

Plugin Claude Code

Bundles 33 skills, 1 MCP server · 2,497 tokens together

Look up genes, fetch sequences, predict variant consequences, find orthologs, and retrieve cross-database xrefs from Ensembl REST via MCP. STDIO or Streamable HTTP.

genecell/preprint-fulltext

Plugin Claude Code

Bundles 1 skill, 1 MCP server · 190 tokens together

Retrieve full text of bioRxiv/medRxiv/arXiv preprints as structured sections to ground scientific reasoning and deep research, search/discover preprints, and build embedding-ready corpora (Europe PMC + openRxiv S3 + arXiv LaTeXML), via CLI and MCP.